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docs(gazelle): Add details about python_root directive.
While figuring out how to use gazelle with a `src` dir (see bazelbuild#1775) (I figured it out by the way, hence this PR), I noticed that the docs were a little unclear. This PR updates the `gazelle` docs to include details about the `python_root` directive and how to use it. I also fix a the default value for the `python_generation_mode_per_file_include_init` directive, as it was incorrectly listed as "package".
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