behapy

Behavioural neuroscience data wrangling and analysis tools

Installation

Execute the following from the project folder in a shell with conda on the path:

conda env create -f environment.yaml
conda activate behapy
pip install -e .

Examples

There is a MedPC event reading example in the examples subfolder. This example by default assumes MedPC data files are in the same folder as the notebook file.

Processing steps

Converting source data to bids

tdt2bids session_fn experiment_fn source_dat

Visualise the data for QC.

ppd .

Preprocess the data.

Process the data using the preprocess executable from within BIDSROOT.

preprocess .