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ejohnson643 authored Aug 21, 2023
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**E**mpirical **M**arginal resampling **B**etter **E**valuates **D**imensionality **R**eduction, or **EMBEDR**, is a method for evaluating the extent to which an embedding generated by a dimensionality reduction algorithm contains structures that are more similar to the structures in the high-dimensional space than we expect by random chance. The method applies the concept of an empirical hypothesis test, where a null distribution for a sample statistic is generated via marginal resampling, in order to estimate whether samples are better-embedded than a given DRA might do by chance.

For complete details, see our [preprint](https://www.biorxiv.org/content/10.1101/2020.11.18.389031v2).
For complete details, see our [publication](https://doi.org/10.1016/j.patter.2022.100443).

## Installation

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