Update to owlready0.45

ontopy/excelparser.py

@@ -552,15 +552,14 @@ def get_metadata_from_dataframe(  # pylint: disable=too-many-locals,too-many-bra
 
         # Add versionInfo
         try:
-            _add_literal(
-                metadata,
-                onto.metadata.versionInfo,
-                "Ontology version Info",
-                metadata=True,
-                only_one=True,
+            name_list = _parse_literal(
+                metadata, "Ontology version Info", metadata=True
             )
+            onto.metadata.versionInfo.append(name_list[0])
         except AttributeError:
             pass
+
+        onto.set_version(onto.get_version())
     return onto, catalog
 
 

ontopy/ontology.py

@@ -97,7 +97,7 @@ def get_ontology(
                   version of EMMO. Until first stable release
                   emmo-inferred and emmo-development will be the same.
             OntologyClass: If given and `base_iri` doesn't correspond
-                to an existing ontology, a new ontology is created of
+                 an existing ontology, a new ontology is created of
                 this Ontology subclass.  Defaults to `ontopy.Ontology`.
             label_annotations: Sequence of label IRIs used for accessing
                 entities in the ontology given that they are in the ontology.
@@ -875,6 +875,7 @@ def save(
         write_catalog_file=False,
         append_catalog=False,
         catalog_file="catalog-v001.xml",
+        keep_python_names=False,
         **kwargs,
     ) -> Path:
         """Writes the ontology to file.
@@ -937,6 +938,29 @@ def save(
                     "'Known issues' section of the README."
                 )
             )
+        if not keep_python_names:
+            ontocopy = self.copy()
+            ontocopy._del_data_triple_spod(
+                p=ontocopy._abbreviate(
+                    "http://www.lesfleursdunormal.fr/static/_downloads/"
+                    "owlready_ontology.owl#python_name"
+                )
+            )
+            returnpath = ontocopy.save(
+                filename=filename,
+                format=format,
+                dir=dir,
+                mkdir=mkdir,
+                overwrite=overwrite,
+                recursive=recursive,
+                squash=squash,
+                write_catalog_file=write_catalog_file,
+                append_catalog=append_catalog,
+                catalog_file=catalog_file,
+                keep_python_names=True,
+            )
+            return returnpath
+
         revmap = {value: key for key, value in FMAP.items()}
         if filename is None:
             if format:
@@ -988,6 +1012,7 @@ def save(
                     recursive=False,
                     squash=False,
                     write_catalog_file=False,
+                    keep_python_names=keep_python_names,
                     **kwargs,
                 )
 
@@ -1104,9 +1129,18 @@ def copy(self):
                 recursive=True,
                 write_catalog_file=True,
                 mkdir=True,
+                keep_python_names=True,
             )
+            # copy all in dirname to new directory
+            # newdir = Path("/home/flb/projects/Team4.0/EMMOntoPy/temp/newonto")
+            # import shutil
+
+            # shutil.copytree(dirname, newdir)
+            # print(filename)
             ontology = get_ontology(filename).load()
             ontology.name = self.name
+            ontology.iri = self.iri
+            ontology.base_iri = self.base_iri
         return ontology
 
     def get_imported_ontologies(self, recursive=False):

tests/test_excelparser/result_ontology/fromexcelonto.ttl

@@ -4,6 +4,7 @@
 @prefix owl: <http://www.w3.org/2002/07/owl#> .
 @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
 @prefix skos: <http://www.w3.org/2004/02/skos/core#> .
+@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
 
 <http://emmo.info/emmo/domain/onto> a owl:Ontology ;
     dcterms:contributor "SINTEF"@en,
@@ -14,7 +15,8 @@
     dcterms:title "A test domain ontology"@en ;
     owl:imports <http://emmo.info/emmo>,
         <http://ontology.info/ontology> ;
-    owl:versionInfo "0.01"@en .
+    owl:versionIRI <http://emmo.info/emmo/domain/0.01/onto> ;
+    owl:versionInfo "0.01"^^xsd:string .
 
 :EMMO_0264be35-e8ad-5b35-a1a3-84b37bde22d1 a owl:Class ;
     emmo:EMMO_967080e5_2f42_4eb2_a3a9_c58143e835f9 "Temporal pattern occurring in a time interval"@en ;

tests/test_excelparser/result_ontology/fromexcelonto_only_classes.ttl

@@ -4,6 +4,7 @@
 @prefix owl: <http://www.w3.org/2002/07/owl#> .
 @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
 @prefix skos: <http://www.w3.org/2004/02/skos/core#> .
+@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
 
 <http://emmo.info/emmo/domain/onto> a owl:Ontology ;
     dcterms:contributor "SINTEF"@en,
@@ -14,7 +15,8 @@
     dcterms:title "A test domain ontology"@en ;
     owl:imports <http://emmo.info/emmo>,
         <http://ontology.info/ontology> ;
-    owl:versionInfo "0.01"@en .
+    owl:versionIRI <http://emmo.info/emmo/domain/0.01/onto> ;
+    owl:versionInfo "0.01"^^xsd:string .
 
 :EMMO_0264be35-e8ad-5b35-a1a3-84b37bde22d1 a owl:Class ;
     emmo:EMMO_967080e5_2f42_4eb2_a3a9_c58143e835f9 "Temporal pattern occurring in a time interval"@en ;

tests/test_excelparser/test_excelparser.py

@@ -33,7 +33,18 @@ def test_excelparser(repo_dir: "Path") -> None:
         repo_dir / "tests" / "test_excelparser" / "onto_update.xlsx"
     )
     ontology, catalog, errors = create_ontology_from_excel(xlspath, force=True)
-    # ontology.save("test.ttl") # used for printing new ontology when debugging
+    # ontology.save("test.ttl", keep_python_names=False) # used for printing new ontology when debugging
+    ontology._del_data_triple_spod(
+        p=ontology._abbreviate(
+            "http://www.lesfleursdunormal.fr/static/_downloads/"
+            "owlready_ontology.owl#python_name"
+        )
+    )
+
+    ontology.save(
+        "test.ttl", keep_python_names=True
+    )  # used for printing new ontology when debugging
+
     assert onto == ontology
     assert errors.keys() == {
         "already_defined",