seeq v1.1.2

Seeq release 1.1

New features:

• Find all matches. (-a option)
• Find best match. (-b option)
• Convert/ignore non-dna characters. (-x option)
• Memory limit. (-y option)
• Released Python module.
• Released C library.

Code improvements:

• Improved performance.
• Memory footprint reduced by a factor of 12.
• Corrected several bugs.

seeq v1.0

First seeq release (v1.0)

Features:

• DNA/RNA read matching using pattern sequence.
• Levenshtein distance as matching metric.
• Various output formats (count, lines, distance, match position...).
• Support for inverted matching (non-matching sequences).
• Sequence trimming using prefix and suffix options.
• Inputs supported: File or stdin stream.
• Outputs: stdout only.
• Match highlighting in terminal window output.

Known issues:

• Only one match per line supported.
• Multithreading not supported.