Backporting changes to release-v1.2 #1517

eapolinario · 2023-02-22T22:29:31Z

TL;DR

Backport recent changes to the release-v1.2 branch

List of backported changes:

Signed-off-by: Eduardo Apolinario <[email protected]>

Signed-off-by: Eduardo Apolinario <[email protected]> Signed-off-by: Eduardo Apolinario <[email protected]> Co-authored-by: Eduardo Apolinario <[email protected]>

…1240) * first commit Signed-off-by: Ryan Nazareth <[email protected]> * add tensorflow example tf record transformer Signed-off-by: Ryan Nazareth <[email protected]> * refactor Signed-off-by: Ryan Nazareth <[email protected]> * correct tfexample description Signed-off-by: Ryan Nazareth <[email protected]> * fix test_native.py Signed-off-by: Ryan Nazareth <[email protected]> * add tensorflow docs and reqs Signed-off-by: Ryan Nazareth <[email protected]> * add tensorflow docs and reqs1 Signed-off-by: Ryan Nazareth <[email protected]> * tensorflow import in init Signed-off-by: Ryan Nazareth <[email protected]> * fix failing tests Signed-off-by: Ryan Nazareth <[email protected]> * add tensorflow pinned version to reqs Signed-off-by: Ryan Nazareth <[email protected]> * pin grpcio-status to remove protobuf error Signed-off-by: Ryan Nazareth <[email protected]> * add suggested changes Signed-off-by: Ryan Nazareth <[email protected]> * redesign transformer Signed-off-by: Ryan Nazareth <[email protected]> * remove old script Signed-off-by: Ryan Nazareth <[email protected]> * fix type reference for TFREcordDataset Signed-off-by: Ryan Nazareth <[email protected]> * refactor Signed-off-by: Ryan Nazareth <[email protected]> * refactor Signed-off-by: Ryan Nazareth <[email protected]> * spacing and uppercase Signed-off-by: Ryan Nazareth <[email protected]> * redesign with tfdir and tfrecordfile subclass Signed-off-by: Ryan Nazareth <[email protected]> * fix conflicts and typos Signed-off-by: Ryan Nazareth <[email protected]> * address majority of comments Signed-off-by: Ryan Nazareth <[email protected]> * refactor Signed-off-by: Ryan Nazareth <[email protected]> * fix test with flytefile and metadata annotated Signed-off-by: Ryan Nazareth <[email protected]> * fix check for example records in directory Signed-off-by: Ryan Nazareth <[email protected]> * refactor and correct typing Signed-off-by: Ryan Nazareth <[email protected]> * lint Signed-off-by: Ryan Nazareth <[email protected]> * import annotated from typing_extensions Signed-off-by: Ryan Nazareth <[email protected]> * tweak to tests to test case when Config not passed in as type Signed-off-by: Ryan Nazareth <[email protected]> * add suggested changes Signed-off-by: Ryan Nazareth <[email protected]> * add task for tfrecord dir with no config in test Signed-off-by: Ryan Nazareth <[email protected]> * get filenames from local dir instead of remote Signed-off-by: Ryan Nazareth <[email protected]> Signed-off-by: Ryan Nazareth <[email protected]>

Signed-off-by: Kevin Su <[email protected]> Signed-off-by: Kevin Su <[email protected]>

* Set default format of structured dataset to empty Signed-off-by: Kevin Su <[email protected]> * Fix tests Signed-off-by: Kevin Su <[email protected]> * Fix tests Signed-off-by: Kevin Su <[email protected]> * lint Signed-off-by: Kevin Su <[email protected]> * last error (#1364) Signed-off-by: Yee Hing Tong <[email protected]> Signed-off-by: Kevin Su <[email protected]> Signed-off-by: Yee Hing Tong <[email protected]> Co-authored-by: Yee Hing Tong <[email protected]>

* Adds pyflyte CLI reference guide Signed-off-by: Samhita Alla <[email protected]> * bump python version Signed-off-by: Samhita Alla <[email protected]> * bump python version Signed-off-by: Samhita Alla <[email protected]> * resolve docs error Signed-off-by: Samhita Alla <[email protected]> * set nested to none Signed-off-by: Samhita Alla <[email protected]> * remove flyteidl version constraint Signed-off-by: Samhita Alla <[email protected]> * update requirements Signed-off-by: Samhita Alla <[email protected]> Signed-off-by: Samhita Alla <[email protected]>

Signed-off-by: Yee Hing Tong <[email protected]>

Signed-off-by: Kevin Su <[email protected]>

#1375) Signed-off-by: H. Furkan Vural <[email protected]> Implemented cache overwrite feature is added on flytekit as well for the completeness. In order to support the cache eviction RFC, an overwrite parameter was added, indicating the data store should replace an existing artifact instead of creating a new one on local calls.

…serialized context (#1378) Signed-off-by: Yee Hing Tong <[email protected]>

… when loading module (#1348) Signed-off-by: Ketan Umare <[email protected]>

* Register databricks plugin Signed-off-by: Kevin Su <[email protected]> * Update databricks plugin Signed-off-by: Kevin Su <[email protected]> * register databricks Signed-off-by: Kevin Su <[email protected]> * nit Signed-off-by: Kevin Su <[email protected]> * nit Signed-off-by: Kevin Su <[email protected]> Signed-off-by: Kevin Su <[email protected]> Co-authored-by: Yee Hing Tong <[email protected]>

For Pod tasks, if the primary_container_name is not specified, it should default. Signed-off-by: Ketan Umare <[email protected]>

…for --domain (#1381) Co-authored-by: Eduardo Apolinario <[email protected]>

* Add support for Optional to dataclass transformer Signed-off-by: Eduardo Apolinario <[email protected]> * Add one more test Signed-off-by: Eduardo Apolinario <[email protected]> * Add one more test Signed-off-by: Eduardo Apolinario <[email protected]> * Fix serialization of optional flyte types Signed-off-by: Eduardo Apolinario <[email protected]> Signed-off-by: Eduardo Apolinario <[email protected]> Co-authored-by: Eduardo Apolinario <[email protected]>

Signed-off-by: Niels Bantilan <[email protected]> Signed-off-by: Niels Bantilan <[email protected]> Co-authored-by: Kevin Su <[email protected]>

* Added more pod tests and an example pod task Signed-off-by: Ketan Umare <[email protected]> * fixing test and name Signed-off-by: Ketan Umare <[email protected]> * updated Signed-off-by: Ketan Umare <[email protected]> Signed-off-by: Ketan Umare <[email protected]>

Signed-off-by: Kevin Su <[email protected]> Signed-off-by: Kevin Su <[email protected]> Co-authored-by: Eduardo Apolinario <[email protected]>

Signed-off-by: Patrick Brogan <[email protected]>

Signed-off-by: Kevin Su <[email protected]>

Signed-off-by: Yee Hing Tong <[email protected]>

Signed-off-by: Kevin Su <[email protected]>

* MLFlow plugin in progress Signed-off-by: Ketan Umare <[email protected]> * wip Signed-off-by: Kevin Su <[email protected]> * wip Signed-off-by: Kevin Su <[email protected]> * update test Signed-off-by: Kevin Su <[email protected]> * nit Signed-off-by: Kevin Su <[email protected]> * nit Signed-off-by: Kevin Su <[email protected]> * update readme Signed-off-by: Kevin Su <[email protected]> * lint Signed-off-by: Kevin Su <[email protected]> * wip Signed-off-by: Kevin Su <[email protected]> * dwip Signed-off-by: Kevin Su <[email protected]> * wip Signed-off-by: Kevin Su <[email protected]> * nit Signed-off-by: Kevin Su <[email protected]> * nit Signed-off-by: Kevin Su <[email protected]> * change experiment name Signed-off-by: Kevin Su <[email protected]> * nit Signed-off-by: Kevin Su <[email protected]> * Add mlflow to index.rst Signed-off-by: Kevin Su <[email protected]> * use experiment name that user provided Signed-off-by: Kevin Su <[email protected]> * update doc-requirements.txt Signed-off-by: Kevin Su <[email protected]> * Add backend plugin deployment Signed-off-by: Kevin Su <[email protected]> * generate doc for method Signed-off-by: Kevin Su <[email protected]> * lint Signed-off-by: Kevin Su <[email protected]> * update docstring Signed-off-by: Niels Bantilan <[email protected]> * update docstring Signed-off-by: Niels Bantilan <[email protected]> * Update tracking.py Signed-off-by: Niels Bantilan <[email protected]> Signed-off-by: Ketan Umare <[email protected]> Signed-off-by: Kevin Su <[email protected]> Signed-off-by: Niels Bantilan <[email protected]> Co-authored-by: Kevin Su <[email protected]> Co-authored-by: Niels Bantilan <[email protected]>

Signed-off-by: Niels Bantilan <[email protected]> Signed-off-by: Niels Bantilan <[email protected]>

* Read polars dataframe in a folder Signed-off-by: Kevin Su <[email protected]> * Read polars dataframe in a folder Signed-off-by: Kevin Su <[email protected]> * Load huggingface and spark plugin implicitly Signed-off-by: Kevin Su <[email protected]> * nit Signed-off-by: Kevin Su <[email protected]> * nit Signed-off-by: Kevin Su <[email protected]> * Fix tests Signed-off-by: Kevin Su <[email protected]> * remove _pyspark alias Signed-off-by: Yee Hing Tong <[email protected]> Signed-off-by: Kevin Su <[email protected]> Signed-off-by: Yee Hing Tong <[email protected]> Co-authored-by: Yee Hing Tong <[email protected]>

Signed-off-by: Niels Bantilan <[email protected]>

* Add dummy task type to test backend plugin Signed-off-by: Bernhard Stadlbauer <[email protected]> * Add docs page Signed-off-by: Bernhard Stadlbauer <[email protected]> * Add dask models Signed-off-by: Bernhard Stadlbauer <[email protected]> * Add function to convert resources Signed-off-by: Bernhard Stadlbauer <[email protected]> * Add tests to `dask` task Signed-off-by: Bernhard Stadlbauer <[email protected]> * Remove namespace Signed-off-by: Bernhard Stadlbauer <[email protected]> * Update setup.py Signed-off-by: Bernhard Stadlbauer <[email protected]> * Add dask to `plugin/README.md` Signed-off-by: Bernhard Stadlbauer <[email protected]> * Add README.md for `dask` Signed-off-by: Bernhard Stadlbauer <[email protected]> * Top level export of `JopPodSpec` and `DaskCluster` Signed-off-by: Bernhard Stadlbauer <[email protected]> * Update docs for images Signed-off-by: Bernhard Stadlbauer <[email protected]> * Update README.md Signed-off-by: Bernhard Stadlbauer <[email protected]> * Update models after `flyteidl` change Signed-off-by: Bernhard Stadlbauer <[email protected]> * Update task after `flyteidl` change Signed-off-by: Bernhard Stadlbauer <[email protected]> * Raise error when less than 1 worker Signed-off-by: Bernhard Stadlbauer <[email protected]> * Update flyteidl to >= 1.3.2 Signed-off-by: Bernhard Stadlbauer <[email protected]> * Update doc requirements Signed-off-by: Bernhard Stadlbauer <[email protected]> * Update doc-requirements.txt Signed-off-by: Bernhard Stadlbauer <[email protected]> * Re-lock dependencies on linux Signed-off-by: Bernhard Stadlbauer <[email protected]> * Update dask API docs Signed-off-by: Bernhard Stadlbauer <[email protected]> * Fix documentation links Signed-off-by: Bernhard Stadlbauer <[email protected]> * Default optional model constructor arguments to `None` Signed-off-by: Bernhard Stadlbauer <[email protected]> * Refactor `convert_resources_to_resource_model` to `core.resources` Signed-off-by: Bernhard Stadlbauer <[email protected]> * Use `convert_resources_to_resource_model` in `core.node` Signed-off-by: Bernhard Stadlbauer <[email protected]> * Incorporate review feedback Signed-off-by: Eduardo Apolinario <[email protected]> * Lint Signed-off-by: Eduardo Apolinario <[email protected]> Signed-off-by: Bernhard Stadlbauer <[email protected]> Signed-off-by: Bernhard Stadlbauer <[email protected]> Signed-off-by: Eduardo Apolinario <[email protected]> Co-authored-by: Eduardo Apolinario <[email protected]> Co-authored-by: Eduardo Apolinario <[email protected]>

Signed-off-by: Kevin Su <[email protected]>

* support checkpointing in local mode from cached tasks * clear cache before tests --------- Co-authored-by: Stef Nelson-Lindall <[email protected]> Co-authored-by: Eduardo Apolinario <[email protected]>

* Deprecate FlyteSchema Signed-off-by: Kevin Su <[email protected]> * Remove version Signed-off-by: Kevin Su <[email protected]> --------- Signed-off-by: Kevin Su <[email protected]> Co-authored-by: Eduardo Apolinario <[email protected]>

* Use scarf images Signed-off-by: Eduardo Apolinario <[email protected]> * Use scarf names in tests. Signed-off-by: Eduardo Apolinario <[email protected]> --------- Signed-off-by: Eduardo Apolinario <[email protected]> Co-authored-by: Eduardo Apolinario <[email protected]>

* add reference_launch_plan to flytekit api ref Signed-off-by: Niels Bantilan <[email protected]> * import in init, add docstrings Signed-off-by: Niels Bantilan <[email protected]> * add more to references Signed-off-by: Niels Bantilan <[email protected]> * fix lint Signed-off-by: Niels Bantilan <[email protected]> * update Signed-off-by: Niels Bantilan <[email protected]> * fix up docstrings Signed-off-by: Niels Bantilan <[email protected]> --------- Signed-off-by: Niels Bantilan <[email protected]> Co-authored-by: Eduardo Apolinario <[email protected]> Co-authored-by: Samhita Alla <[email protected]>

Signed-off-by: Kevin Su <[email protected]>

Signed-off-by: Samhita Alla <[email protected]>

* wip Signed-off-by: Kevin Su <[email protected]> * Fix mypy errors Signed-off-by: Kevin Su <[email protected]> * Fix mypy errors Signed-off-by: Kevin Su <[email protected]> * Fix tests Signed-off-by: Kevin Su <[email protected]> * Fix tests Signed-off-by: Kevin Su <[email protected]> * Fix tests Signed-off-by: Kevin Su <[email protected]> * wip Signed-off-by: Kevin Su <[email protected]> * wip Signed-off-by: Kevin Su <[email protected]> * fix tests Signed-off-by: Kevin Su <[email protected]> * fix tests Signed-off-by: Kevin Su <[email protected]> * fix test Signed-off-by: Kevin Su <[email protected]> * nit Signed-off-by: Kevin Su <[email protected]> * Update type Signed-off-by: Kevin Su <[email protected]> * Fix tests Signed-off-by: Kevin Su <[email protected]> * Fix tests Signed-off-by: Kevin Su <[email protected]> * Fix tests Signed-off-by: Kevin Su <[email protected]> * nit Signed-off-by: Kevin Su <[email protected]> * update dev-requirements.txt Signed-off-by: Kevin Su <[email protected]> * Address comment Signed-off-by: Kevin Su <[email protected]> * upgrade torch Signed-off-by: Kevin Su <[email protected]> * nit Signed-off-by: Kevin Su <[email protected]> * lint Signed-off-by: Kevin Su <[email protected]> --------- Signed-off-by: Kevin Su <[email protected]> Signed-off-by: Kevin Su <[email protected]> Co-authored-by: Yee Hing Tong <[email protected]>

* wip Signed-off-by: Kevin Su <[email protected]> * wip Signed-off-by: Kevin Su <[email protected]> * wip Signed-off-by: Kevin Su <[email protected]> * wip Signed-off-by: Kevin Su <[email protected]> * wip Signed-off-by: Kevin Su <[email protected]> * add tests Signed-off-by: Kevin Su <[email protected]> * add tests Signed-off-by: Kevin Su <[email protected]> * support dynamic task Signed-off-by: Kevin Su <[email protected]> * test Signed-off-by: Kevin Su <[email protected]> * test Signed-off-by: Kevin Su <[email protected]> * nit Signed-off-by: Kevin Su <[email protected]> * lazy compile Signed-off-by: Kevin Su <[email protected]> * lint Signed-off-by: Kevin Su <[email protected]> * add tests Signed-off-by: Kevin Su <[email protected]> * nit Signed-off-by: Kevin Su <[email protected]> * nit Signed-off-by: Kevin Su <[email protected]> * test Signed-off-by: Kevin Su <[email protected]> * test Signed-off-by: Kevin Su <[email protected]> * lint Signed-off-by: Kevin Su <[email protected]> * test Signed-off-by: Kevin Su <[email protected]> * test Signed-off-by: Kevin Su <[email protected]> * test Signed-off-by: Kevin Su <[email protected]> * test Signed-off-by: Kevin Su <[email protected]> * nit Signed-off-by: Kevin Su <[email protected]> * nit Signed-off-by: Kevin Su <[email protected]> * nit Signed-off-by: Kevin Su <[email protected]> * update test Signed-off-by: Kevin Su <[email protected]> --------- Signed-off-by: Kevin Su <[email protected]>

* Get the origin type when serializing dataclass Signed-off-by: Kevin Su <[email protected]> * test Signed-off-by: Kevin Su <[email protected]> * nit Signed-off-by: Kevin Su <[email protected]> * update test Signed-off-by: Kevin Su <[email protected]> * lint Signed-off-by: Kevin Su <[email protected]> * nit Signed-off-by: Kevin Su <[email protected]> --------- Signed-off-by: Kevin Su <[email protected]> Co-authored-by: Niels Bantilan <[email protected]>

Signed-off-by: Eduardo Apolinario <[email protected]>

* Delay initialization of SynchronousFlyteClient in FlyteRemote Signed-off-by: Eduardo Apolinario <[email protected]> * Fix spark plugin flyteremote test. Signed-off-by: Eduardo Apolinario <[email protected]> * Lint Signed-off-by: Eduardo Apolinario <[email protected]> --------- Signed-off-by: Eduardo Apolinario <[email protected]> Co-authored-by: Eduardo Apolinario <[email protected]>

Signed-off-by: Eduardo Apolinario <[email protected]>

This reverts commit 3798450. Signed-off-by: Eduardo Apolinario <[email protected]>

Signed-off-by: Eduardo Apolinario <[email protected]>

This reverts commit 41a9c7a. Signed-off-by: Eduardo Apolinario <[email protected]>

codecov · 2023-02-23T00:09:42Z

Codecov Report

❗ No coverage uploaded for pull request base (release-v1.2@10bf232). Click here to learn what that means.
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Signed-off-by: Eduardo Apolinario <[email protected]>

eapolinario and others added 30 commits February 22, 2023 11:52

Force flyteidl==1.2.9

f0a4f68

Signed-off-by: Eduardo Apolinario <[email protected]>

Sanitize query template input in sqlite task (#1359)

5c6d0ec

Signed-off-by: Eduardo Apolinario <[email protected]> Signed-off-by: Eduardo Apolinario <[email protected]> Co-authored-by: Eduardo Apolinario <[email protected]>

update ray plugin dependency (#1361)

bd141f9

Signed-off-by: Kevin Su <[email protected]> Signed-off-by: Kevin Su <[email protected]>

Signaling (#1133)

9abc7f9

Signed-off-by: Yee Hing Tong <[email protected]>

Adding created and updated at to ExecutionClosure model (#1371)

827be90

Signed-off-by: Yee Hing Tong <[email protected]>

Add Databricks config to Spark Job (#1358)

567ed29

Signed-off-by: Kevin Su <[email protected]>

Remove project/domain from being overridden with execution values in …

23dae6f

…serialized context (#1378) Signed-off-by: Yee Hing Tong <[email protected]>

Use TaskSpec instead of TaskTemplate for fetch_task and avoid network…

6fccbf9

… when loading module (#1348) Signed-off-by: Ketan Umare <[email protected]>

PodSpec should not require primary_container name (#1380)

282b149

For Pod tasks, if the primary_container_name is not specified, it should default. Signed-off-by: Ketan Umare <[email protected]>

fix(pyflyte): change -d to -D for --destination-dir as -d is already …

a21ba24

…for --domain (#1381) Co-authored-by: Eduardo Apolinario <[email protected]>

add FastSerializationSettings to docs (#1386)

d84c13c

Signed-off-by: Niels Bantilan <[email protected]> Signed-off-by: Niels Bantilan <[email protected]> Co-authored-by: Kevin Su <[email protected]>

Convert default dict to json string in pyflyte run (#1399)

bfc2b15

Signed-off-by: Kevin Su <[email protected]> Signed-off-by: Kevin Su <[email protected]> Co-authored-by: Eduardo Apolinario <[email protected]>

docs: update register help, non-fast version is supported (#1402)

42c89dd

Signed-off-by: Patrick Brogan <[email protected]>

Update log level for structured dataset (#1394)

cd69fc5

Signed-off-by: Kevin Su <[email protected]>

Add Niels to code owners (#1404)

f25cf67

Signed-off-by: Kevin Su <[email protected]>

Signal use (#1398)

0f3f468

Signed-off-by: Yee Hing Tong <[email protected]>

User Documentation Proposal (#1200)

3f700ff

Signed-off-by: Kevin Su <[email protected]>

fix remote API reference (#1405)

8061d8b

Signed-off-by: Niels Bantilan <[email protected]> Signed-off-by: Niels Bantilan <[email protected]>

Update default config to work out-of-the-box with flytectl demo (#1384)

25fe341

Signed-off-by: Niels Bantilan <[email protected]>

Add support for overriding task configurations (#1410)

74ba98b

Signed-off-by: Kevin Su <[email protected]>

bethebunny and others added 9 commits February 22, 2023 14:21

Support checkpointing in local mode from cached tasks (#1457)

ab6e9a9

* support checkpointing in local mode from cached tasks * clear cache before tests --------- Co-authored-by: Stef Nelson-Lindall <[email protected]> Co-authored-by: Eduardo Apolinario <[email protected]>

Deprecate FlyteSchema (#1418)

56a7fcd

* Deprecate FlyteSchema Signed-off-by: Kevin Su <[email protected]> * Remove version Signed-off-by: Kevin Su <[email protected]> --------- Signed-off-by: Kevin Su <[email protected]> Co-authored-by: Eduardo Apolinario <[email protected]>

Use non-root user in default flytekit image (#1417)

9de0288

Signed-off-by: Kevin Su <[email protected]>

Fix PyTorch transformer (#1510)

3b5e9eb

Signed-off-by: Samhita Alla <[email protected]>

eapolinario requested review from wild-endeavor, kumare3 and pingsutw as code owners February 22, 2023 22:29

wild-endeavor previously approved these changes Feb 22, 2023

View reviewed changes

eapolinario and others added 3 commits February 22, 2023 14:39

Fix bad merge

3e37177

Signed-off-by: Eduardo Apolinario <[email protected]>

Set flytekit and flyteidl bounds in plugins tests

01ba21a

Signed-off-by: Eduardo Apolinario <[email protected]>

eapolinario dismissed wild-endeavor’s stale review via 01ba21a February 22, 2023 23:16

eapolinario added 6 commits February 22, 2023 15:26

Revert "Fix mypy errors (#1313)"

dd79a11

This reverts commit 3798450. Signed-off-by: Eduardo Apolinario <[email protected]>

Fix requirements in dask and ray plugins

d2a002c

Signed-off-by: Eduardo Apolinario <[email protected]>

Fix papermill tests requirements

d9d94d5

Signed-off-by: Eduardo Apolinario <[email protected]>

Fix doc-requirements

3e23781

Signed-off-by: Eduardo Apolinario <[email protected]>

dask plugin requirements

ecea6cb

Signed-off-by: Eduardo Apolinario <[email protected]>

Revert "Add dask plugin #patch (#1366)"

abfcbb4

This reverts commit 41a9c7a. Signed-off-by: Eduardo Apolinario <[email protected]>

eapolinario added 4 commits February 22, 2023 16:16

Fix deck-standard test

b9492da

Signed-off-by: Eduardo Apolinario <[email protected]>

Fix great-expectations requirements

87bbd6f

Signed-off-by: Eduardo Apolinario <[email protected]>

Fix onnx-tensorflow requirements

052ea88

Signed-off-by: Eduardo Apolinario <[email protected]>

Fix sqlalchemy requirements

2277366

Signed-off-by: Eduardo Apolinario <[email protected]>

wild-endeavor approved these changes Feb 23, 2023

View reviewed changes

eapolinario merged commit d75c800 into release-v1.2 Feb 23, 2023

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Backporting changes to release-v1.2 #1517

Backporting changes to release-v1.2 #1517

eapolinario commented Feb 22, 2023 •

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Backporting changes to release-v1.2 #1517

Backporting changes to release-v1.2 #1517

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