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[release v1.2] Backport v1.6 #1644

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TL;DR

Please replace this text with a description of what this PR accomplishes.

Type

  • Bug Fix
  • Feature
  • Plugin

Are all requirements met?

  • Code completed
  • Smoke tested
  • Unit tests added
  • Code documentation added
  • Any pending items have an associated Issue

Complete description

How did you fix the bug, make the feature etc. Link to any design docs etc

Tracking Issue

https://github.com/flyteorg/flyte/issues/

Follow-up issue

NA
OR
https://github.com/flyteorg/flyte/issues/

wild-endeavor and others added 30 commits May 16, 2023 14:00
Signed-off-by: Ketan Umare <[email protected]>
Signed-off-by: Yee Hing Tong <[email protected]>
* Remove retry from flytekit's setup.py and regenerate requirements

Signed-off-by: Eduardo Apolinario <[email protected]>

* Add to sagemaker

Signed-off-by: Eduardo Apolinario <[email protected]>

* Remove retry from sagemaker plugin requirements file

Signed-off-by: Eduardo Apolinario <[email protected]>

* Restore doc-requirements.txt

Signed-off-by: eduardo apolinario <[email protected]>

* Fix bad merge

Signed-off-by: eduardo apolinario <[email protected]>

---------

Signed-off-by: Eduardo Apolinario <[email protected]>
Signed-off-by: eduardo apolinario <[email protected]>
Co-authored-by: Eduardo Apolinario <[email protected]>
Signed-off-by: Yee Hing Tong <[email protected]>
Signed-off-by: Ketan Umare <[email protected]>
Signed-off-by: Niels Bantilan <[email protected]>
Signed-off-by: Yee Hing Tong <[email protected]>
* fix: Make FlyteFile compatible with Annotated[..., HashMethod]

See issue #3424

Signed-off-by: Adrian Rumpold <[email protected]>

* tests: Add test case for FlyteFile with HashMethod annotation

Issue: #3424
Signed-off-by: Adrian Rumpold <[email protected]>

* fix: Use typing_extensions.Annotated for py3.8 compatibility

Issue: #3424
Signed-off-by: Adrian Rumpold <[email protected]>

* fix: Use `get_args` and `get_origin` from typing_extensions for py3.8 compatibility

Issue: #3424
Signed-off-by: Adrian Rumpold <[email protected]>

* fix(tests): Use fixture for local dummy file

Signed-off-by: Adrian Rumpold <[email protected]>

---------

Signed-off-by: Adrian Rumpold <[email protected]>
* move FlyteSchema deprecation warning to initialization method

Signed-off-by: Niels Bantilan <[email protected]>

* update

Signed-off-by: Niels Bantilan <[email protected]>

---------

Signed-off-by: Niels Bantilan <[email protected]>
…1515)

* add pod_template and pod_template_name arguments for ContainerTask

Signed-off-by: Felix Ruess <[email protected]>

* factor out _serialize_pod_spec into separate util function

Signed-off-by: Felix Ruess <[email protected]>

* model file changes, couple other changes

Signed-off-by: Yee Hing Tong <[email protected]>

* minor cleanup

Signed-off-by: Felix Ruess <[email protected]>

* add unit test for container_task pod_template

Signed-off-by: Felix Ruess <[email protected]>

* bump min version of flyteidl to 1.3.12

for pod template data config support

Signed-off-by: Felix Ruess <[email protected]>

* require flyteidl==1.3.12 in doc-requirements.txt

Signed-off-by: Felix Ruess <[email protected]>

---------

Signed-off-by: Felix Ruess <[email protected]>
Signed-off-by: Yee Hing Tong <[email protected]>
Co-authored-by: Yee Hing Tong <[email protected]>
* TypeTransformer for TensorFlow model

Signed-off-by: Samhita Alla <[email protected]>

* clean up

Signed-off-by: Samhita Alla <[email protected]>

* clean up

Signed-off-by: Samhita Alla <[email protected]>

* fix lint

Signed-off-by: Samhita Alla <[email protected]>

---------

Signed-off-by: Samhita Alla <[email protected]>
* Device auth flow

Signed-off-by: Ketan Umare <[email protected]>

* Device AuthFlow is now available in flytekit

Signed-off-by: Ketan Umare <[email protected]>

* unit tests

Signed-off-by: Ketan Umare <[email protected]>

* test added

Signed-off-by: Ketan Umare <[email protected]>

* updated

Signed-off-by: Ketan Umare <[email protected]>

* Fixed test

Signed-off-by: Ketan Umare <[email protected]>

* Fixed unit test

Signed-off-by: Ketan Umare <[email protected]>

* Fixed lint errors

Signed-off-by: Ketan Umare <[email protected]>

---------

Signed-off-by: Ketan Umare <[email protected]>
* url encode secret first

Signed-off-by: Yee Hing Tong <[email protected]>

* nit

Signed-off-by: Yee Hing Tong <[email protected]>

---------

Signed-off-by: Yee Hing Tong <[email protected]>
* wip

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* test

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

* lint

Signed-off-by: Kevin Su <[email protected]>

* update comment

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

---------

Signed-off-by: Kevin Su <[email protected]>
Signed-off-by: Yee Hing Tong <[email protected]>
* Automatically remove unused import

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

---------

Signed-off-by: Kevin Su <[email protected]>
* Disallow partial lists in map tasks

Signed-off-by: eduardo apolinario <[email protected]>

* Lint

Signed-off-by: eduardo apolinario <[email protected]>

---------

Signed-off-by: eduardo apolinario <[email protected]>
Co-authored-by: eduardo apolinario <[email protected]>
* Convert List[Any] to a single pickle file

* remove redundant code

* keep batchSize only if type contain flytePickle

* fix error

* add batch support to translate_inputs_to_literals

* add ci test

Signed-off-by: Yicheng-Lu-llll <[email protected]>

* improve comment

Signed-off-by: Yicheng-Lu-llll <[email protected]>

* add more ci test

Signed-off-by: Yicheng-Lu-llll <[email protected]>

* improve

Signed-off-by: Yicheng-Lu-llll <[email protected]>

* handle HashMethod case

Signed-off-by: Yicheng-Lu-llll <[email protected]>

* improve format

Signed-off-by: Yicheng-Lu-llll <[email protected]>

* improve

Signed-off-by: Yicheng-Lu-llll <[email protected]>

* improve

Signed-off-by: Yicheng-Lu-llll <[email protected]>

* improve

Signed-off-by: Yicheng-Lu-llll <[email protected]>

* add test_is_batchable

Signed-off-by: Yicheng-Lu-llll <[email protected]>

* Add BatchSize

Signed-off-by: Kevin Su <[email protected]>

* test_batch_size

Signed-off-by: Kevin Su <[email protected]>

---------

Signed-off-by: Yicheng-Lu-llll <[email protected]>
Signed-off-by: Kevin Su <[email protected]>
Co-authored-by: root <[email protected]>
Co-authored-by: Kevin Su <[email protected]>
* Unify sqlalchemy Dockerfiles

Signed-off-by: eduardo apolinario <[email protected]>

* Simplifyte sqlalchemy Dockerfile

Signed-off-by: eduardo apolinario <[email protected]>

* Set pythonpath to /root

Signed-off-by: eduardo apolinario <[email protected]>

---------

Signed-off-by: eduardo apolinario <[email protected]>
Co-authored-by: eduardo apolinario <[email protected]>
* wip

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* pyflyte build

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* Support serialize and package

Signed-off-by: Kevin Su <[email protected]>

* more tests

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* move to plugin

Signed-off-by: Kevin Su <[email protected]>

* test

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

* test

Signed-off-by: Kevin Su <[email protected]>

* test

Signed-off-by: Kevin Su <[email protected]>

* test

Signed-off-by: Kevin Su <[email protected]>

* test

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

* fixed tested

Signed-off-by: Kevin Su <[email protected]>

* fixed tested

Signed-off-by: Kevin Su <[email protected]>

* more tests

Signed-off-by: Kevin Su <[email protected]>

* Add support passing yaml in pyflyte run

Signed-off-by: Kevin Su <[email protected]>

* lint

Signed-off-by: Kevin Su <[email protected]>

* lint

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

---------

Signed-off-by: Kevin Su <[email protected]>
…ror messages (#1582)

* improve input type conversion error

Signed-off-by: Niels Bantilan <[email protected]>

* fix lint

Signed-off-by: Niels Bantilan <[email protected]>

* fix

Signed-off-by: Niels Bantilan <[email protected]>

* add tests

Signed-off-by: Niels Bantilan <[email protected]>

* add tests

Signed-off-by: Niels Bantilan <[email protected]>

* add rich

Signed-off-by: Niels Bantilan <[email protected]>

* fix lint

Signed-off-by: Niels Bantilan <[email protected]>

* remove prototyping script, update loggers

Signed-off-by: Niels Bantilan <[email protected]>

* update __init__.py

Signed-off-by: Niels Bantilan <[email protected]>

* update logger

Signed-off-by: Niels Bantilan <[email protected]>

* update logger

Signed-off-by: Niels Bantilan <[email protected]>

* fix GE and pandera tests

Signed-off-by: Niels Bantilan <[email protected]>

* fix lint

Signed-off-by: Niels Bantilan <[email protected]>

---------

Signed-off-by: Niels Bantilan <[email protected]>
* Add support nested FlyteFile in pyflyte run

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

---------

Signed-off-by: Kevin Su <[email protected]>
* Set cache_regions=True in the case of s3fs

* Linting

Signed-off-by: eduardo apolinario <[email protected]>

* Fix tests

Signed-off-by: eduardo apolinario <[email protected]>

* More linting

Signed-off-by: eduardo apolinario <[email protected]>

---------

Signed-off-by: eduardo apolinario <[email protected]>
Co-authored-by: eduardo apolinario <[email protected]>
* set default ComSpec when running on Windows

Signed-off-by: Kevin Su <[email protected]>

* lint

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

---------

Signed-off-by: Kevin Su <[email protected]>
* add activate-launchplan command to pyflyte

Signed-off-by: Artem Petrov <[email protected]>

* fix linting

Signed-off-by: Artem Petrov <[email protected]>

* rework launchplan command

Signed-off-by: Artem Petrov <[email protected]>

* fix linting

Signed-off-by: Artem Petrov <[email protected]>

---------

Signed-off-by: Artem Petrov <[email protected]>
Signed-off-by: Yee Hing Tong <[email protected]>
* checkpoint

Signed-off-by: Mike Zhong <[email protected]>

* Experimental implementation works well. Instead of messing with the class, we utilize the interpolation and context to dynamically generate a wrapper around the desired script. In the wrapper, we cd to the ctx.working_directory, export the env variables (handled by an additional method to convert dict to str), and then pass the arguments to the script

Signed-off-by: Mike Zhong <[email protected]>

* fix spacing

Signed-off-by: Mike Zhong <[email protected]>

* remove breakpoint

Signed-off-by: Mike Zhong <[email protected]>

* Output ctx.working_directory as single output

Signed-off-by: Mike Zhong <[email protected]>

* more doc strings

Signed-off-by: Mike Zhong <[email protected]>

* more comments

Signed-off-by: Mike Zhong <[email protected]>

* Added comments

Signed-off-by: Mike Zhong <[email protected]>

* Add tests and test files from other branch

Signed-off-by: Mike Zhong <[email protected]>

* minor fix, have function return the instance rather than create. It seems to get registered when flyte packages your project

Signed-off-by: Mike Zhong <[email protected]>

* fix tests

Signed-off-by: Mike Zhong <[email protected]>

* remove set flags not supported by sh

Signed-off-by: Mike Zhong <[email protected]>

* fix spellcheck lint errors

Signed-off-by: Mike Zhong <[email protected]>

* don't have a windows equivalent test script so bypassing those tests for now

Signed-off-by: Mike Zhong <[email protected]>

* Add typing to make_export_string_from_env_dict params

Signed-off-by: Mike Zhong <[email protected]>

* fixup doc string

Signed-off-by: Mike Zhong <[email protected]>

* Refactored the new behavior out into a new class. Did not change implementation details at all

Signed-off-by: Mike Zhong <[email protected]>

* Address linter issues and up test cov

Signed-off-by: Mike Zhong <[email protected]>

* Skip test on windows, no equivalent script

Signed-off-by: Mike Zhong <[email protected]>

* Run black and isort, address SC2236

Signed-off-by: Mike Zhong <[email protected]>

* Refactored class name to remove _, make utility function require name so multiple uses in a workflow don't break

Signed-off-by: Mike Zhong <[email protected]>

* fix utility function

Signed-off-by: Mike Zhong <[email protected]>

* fix utility function call in tests

Signed-off-by: Mike Zhong <[email protected]>

* Fix isort on test_shell.py

Signed-off-by: Mike Zhong <[email protected]>

* adding logging settings to papermill plugin

Signed-off-by: Calvin Leather <[email protected]>

* set level to info logging

* improved comments/docs

---------

Signed-off-by: Mike Zhong <[email protected]>
Signed-off-by: Calvin Leather <[email protected]>
Co-authored-by: Mike Zhong <[email protected]>
Co-authored-by: Mike Zhong <[email protected]>
kumare3 and others added 24 commits May 16, 2023 15:36
* Pyflyte prettified

Signed-off-by: Ketan Umare <[email protected]>

* added dependency

Signed-off-by: Ketan Umare <[email protected]>

---------

Signed-off-by: Ketan Umare <[email protected]>
* pyflyte run now supports json files

Signed-off-by: Ketan Umare <[email protected]>

* added yaml support

Signed-off-by: Ketan Umare <[email protected]>

* fixed parsing

Signed-off-by: Ketan Umare <[email protected]>

* fixed windows test

Signed-off-by: Ketan Umare <[email protected]>

---------

Signed-off-by: Ketan Umare <[email protected]>
* Add is_inside func to ImageSpec

Signed-off-by: Kevin Su <[email protected]>

* test

Signed-off-by: Kevin Su <[email protected]>

* Add is_inside func to ImageSpec

Signed-off-by: Kevin Su <[email protected]>

* Add tests

Signed-off-by: Kevin Su <[email protected]>

* rename

Signed-off-by: Kevin Su <[email protected]>

* rename

Signed-off-by: Kevin Su <[email protected]>

* check execution mode

Signed-off-by: Kevin Su <[email protected]>

---------

Signed-off-by: Kevin Su <[email protected]>
)

* add time measurement framework

Signed-off-by: Yicheng-Lu-llll <[email protected]>

* add time measurement framework

Signed-off-by: Yicheng-Lu-llll <[email protected]>

* nit

Signed-off-by: Yicheng-Lu-llll <[email protected]>

* nit

Signed-off-by: Yicheng-Lu-llll <[email protected]>

* nit

Signed-off-by: Yicheng-Lu-llll <[email protected]>

* nit

Signed-off-by: Yicheng-Lu-llll <[email protected]>

* nit

Signed-off-by: Yicheng-Lu-llll <[email protected]>

---------

Signed-off-by: Yicheng-Lu-llll <[email protected]>
…1614)

* Fixed tests

Signed-off-by: Kevin Su <[email protected]>

* test

Signed-off-by: Kevin Su <[email protected]>

* test

Signed-off-by: Kevin Su <[email protected]>

* test

Signed-off-by: Kevin Su <[email protected]>

* lint

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* test

Signed-off-by: Kevin Su <[email protected]>

* test

Signed-off-by: Kevin Su <[email protected]>

* test

Signed-off-by: Kevin Su <[email protected]>

* test

Signed-off-by: Kevin Su <[email protected]>

* test

Signed-off-by: Kevin Su <[email protected]>

* test

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

* add lru cache

Signed-off-by: Kevin Su <[email protected]>

* update

Signed-off-by: Kevin Su <[email protected]>

* lint

Signed-off-by: Kevin Su <[email protected]>

---------

Signed-off-by: Kevin Su <[email protected]>
Signed-off-by: Ketan Umare <[email protected]>
Signed-off-by: Fabio Graetz <[email protected]>

This PR brings [torch elastic training (`torchrun`)](https://pytorch.org/docs/stable/elastic/run.html) to the pytorch plugin:

```python
from flytekitplugins.kfpytorch import Elastic

@task(
    task_config=Elastic(
        replicas=4,
        nproc_per_node=4,
        ...
    ),
    ...
)
def train(...):
    ...
```

flyteorg/flyte#3614
* update sphinx youtube plugin

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

---------

Signed-off-by: Kevin Su <[email protected]>
* Add default spark image

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

* fix tests

Signed-off-by: Kevin Su <[email protected]>

* Fix tests

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

---------

Signed-off-by: Kevin Su <[email protected]>
* lazy load module

Signed-off-by: Kevin Su <[email protected]>

* lazy load module

Signed-off-by: Kevin Su <[email protected]>

* import

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

* keep structured dataset in flytekit init

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

* fixed tess

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

* fixed tests

Signed-off-by: Kevin Su <[email protected]>

* fixed tests

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

* move import pandas to __init__

Signed-off-by: Kevin Su <[email protected]>

* use lazy import loader instead

Signed-off-by: Kevin Su <[email protected]>

* Fixed tests

Signed-off-by: Kevin Su <[email protected]>

* Fixed tests

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* fix tests

Signed-off-by: Kevin Su <[email protected]>

* regular import

Signed-off-by: Kevin Su <[email protected]>

* fixed tests

Signed-off-by: Kevin Su <[email protected]>

* test

Signed-off-by: Kevin Su <[email protected]>

* lint

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

* lint

Signed-off-by: Kevin Su <[email protected]>

---------

Signed-off-by: Kevin Su <[email protected]>
* override node_name with a name containing underscore

Signed-off-by: Kevin Su <[email protected]>

* add comment

Signed-off-by: Kevin Su <[email protected]>

---------

Signed-off-by: Kevin Su <[email protected]>
* Add support for copying all the files in source root

Signed-off-by: Kevin Su <[email protected]>

* Add tests

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

---------

Signed-off-by: Kevin Su <[email protected]>
Without the overload, the decorated function does not have the proper type of PythonFunctionTask, leading to spurious type errors when attempting to register the task on a FlyteRemote object

Signed-off-by: Matthew Hoffman <[email protected]>
* add annotation option for serialization

* add support for guessing type

* formatting

* test both directions

* remove guessing for annotated types

* clarify usage in test

* Update tests/flytekit/unit/core/test_type_engine.py

---------

Co-authored-by: Eli Bixby <[email protected]>
Co-authored-by: Yee Hing Tong <[email protected]>
Previously, the workflow decorator is hinted as always returning a WorkflowBase, which is not true when _workflow_function is None; similar to #1631, we propose using typing.overload to differentiate the return type of workflow based on the value of _workflow_function

Signed-off-by: Matthew Hoffman <[email protected]>
* wip

Signed-off-by: Kevin Su <[email protected]>

* Fix mypy errors

Signed-off-by: Kevin Su <[email protected]>

* Fix mypy errors

Signed-off-by: Kevin Su <[email protected]>

* Fix tests

Signed-off-by: Kevin Su <[email protected]>

* Fix tests

Signed-off-by: Kevin Su <[email protected]>

* Fix tests

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* wip

Signed-off-by: Kevin Su <[email protected]>

* fix tests

Signed-off-by: Kevin Su <[email protected]>

* fix tests

Signed-off-by: Kevin Su <[email protected]>

* fix test

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

* Update type

Signed-off-by: Kevin Su <[email protected]>

* Fix tests

Signed-off-by: Kevin Su <[email protected]>

* Fix tests

Signed-off-by: Kevin Su <[email protected]>

* Fix tests

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

* update dev-requirements.txt

Signed-off-by: Kevin Su <[email protected]>

* Address comment

Signed-off-by: Kevin Su <[email protected]>

* upgrade torch

Signed-off-by: Kevin Su <[email protected]>

* nit

Signed-off-by: Kevin Su <[email protected]>

* lint

Signed-off-by: Kevin Su <[email protected]>

---------

Signed-off-by: Kevin Su <[email protected]>
Signed-off-by: Kevin Su <[email protected]>
Co-authored-by: Yee Hing Tong <[email protected]>
Signed-off-by: eduardo apolinario <[email protected]>
@eapolinario
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superseded by #1645.

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