logos

.devel/sphinx/conf.py

@@ -14,6 +14,7 @@
 pkg_version = genieclust.__version__
 copyright_year = "2018–2023"
 html_baseurl = "https://genieclust.gagolewski.com/"
+html_logo = "https://www.gagolewski.com/_static/img/genieclust.png"
 github_url = "https://github.com/gagolews/genieclust"
 github_star_repo = "gagolews/genieclust"
 analytics_id = None  # don't use it! this site does not track its users

.devel/sphinx/index.md

@@ -182,6 +182,7 @@ CRAN Entry <https://CRAN.R-project.org/package=genieclust>
 ::::{toctree}
 :maxdepth: 2
 :caption: Examples and Tutorials
+:hidden:
 
 weave/basics
 weave/sklearn_toy_example
@@ -202,6 +203,7 @@ which cannot be installed currently (hasn't been updated for a while)
 ::::{toctree}
 :maxdepth: 1
 :caption: API Documentation
+:hidden:
 
 genieclust
 rapi
@@ -211,6 +213,7 @@ rapi
 ::::{toctree}
 :maxdepth: 1
 :caption: See Also
+:hidden:
 
 Clustering Benchmarks <https://clustering-benchmarks.gagolewski.com>
 Minimalist Data Wrangling in Python <https://datawranglingpy.gagolewski.com/>
@@ -221,6 +224,7 @@ Deep R Programming <https://deepr.gagolewski.com>
 ::::{toctree}
 :maxdepth: 1
 :caption: Appendix
+:hidden:
 
 news
 weave/benchmarks_details

docs/genieclust.html

@@ -160,6 +160,9 @@
     <div class="sidebar-container">
 
       <div class="sidebar-sticky">
+<div class="sidebar-logo-container">
+  <a class="sidebar-brand" href="index.html"><img class="sidebar-logo" src="https://www.gagolewski.com/_static/img/genieclust.png" alt="Logo"/></a>
+</div>
 
 <span class="sidebar-brand-text">
 <a class="sidebar-brand" href="index.html">genieclust</a>
@@ -402,7 +405,7 @@ <h1>Python Package <cite>genieclust</cite> Reference<a class="headerlink" href="
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2023-10-29T14:58:24+1100.
+              Last updated on 2023-11-01T12:02:38+1100.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

docs/genieclust_cluster_validity.html

@@ -160,6 +160,9 @@
     <div class="sidebar-container">
 
       <div class="sidebar-sticky">
+<div class="sidebar-logo-container">
+  <a class="sidebar-brand" href="index.html"><img class="sidebar-logo" src="https://www.gagolewski.com/_static/img/genieclust.png" alt="Logo"/></a>
+</div>
 
 <span class="sidebar-brand-text">
 <a class="sidebar-brand" href="index.html">genieclust</a>
@@ -968,7 +971,7 @@
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2023-10-29T14:58:24+1100.
+              Last updated on 2023-11-01T12:02:38+1100.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

docs/genieclust_compare_partitions.html

@@ -160,6 +160,9 @@
     <div class="sidebar-container">
 
       <div class="sidebar-sticky">
+<div class="sidebar-logo-container">
+  <a class="sidebar-brand" href="index.html"><img class="sidebar-logo" src="https://www.gagolewski.com/_static/img/genieclust.png" alt="Logo"/></a>
+</div>
 
 <span class="sidebar-brand-text">
 <a class="sidebar-brand" href="index.html">genieclust</a>
@@ -1038,7 +1041,7 @@
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2023-10-29T14:58:24+1100.
+              Last updated on 2023-11-01T12:02:38+1100.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

docs/genieclust_genie.html

@@ -160,6 +160,9 @@
     <div class="sidebar-container">
 
       <div class="sidebar-sticky">
+<div class="sidebar-logo-container">
+  <a class="sidebar-brand" href="index.html"><img class="sidebar-logo" src="https://www.gagolewski.com/_static/img/genieclust.png" alt="Logo"/></a>
+</div>
 
 <span class="sidebar-brand-text">
 <a class="sidebar-brand" href="index.html">genieclust</a>
@@ -710,7 +713,7 @@ <h1>genieclust.Genie<a class="headerlink" href="#genieclust-genie" title="Link t
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2023-10-29T14:58:24+1100.
+              Last updated on 2023-11-01T12:02:38+1100.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

docs/genieclust_gic.html

@@ -160,6 +160,9 @@
     <div class="sidebar-container">
 
       <div class="sidebar-sticky">
+<div class="sidebar-logo-container">
+  <a class="sidebar-brand" href="index.html"><img class="sidebar-logo" src="https://www.gagolewski.com/_static/img/genieclust.png" alt="Logo"/></a>
+</div>
 
 <span class="sidebar-brand-text">
 <a class="sidebar-brand" href="index.html">genieclust</a>
@@ -492,7 +495,7 @@ <h1>genieclust.GIc<a class="headerlink" href="#genieclust-gic" title="Link to th
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2023-10-29T14:58:24+1100.
+              Last updated on 2023-11-01T12:02:38+1100.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

docs/genieclust_inequality.html

@@ -160,6 +160,9 @@
     <div class="sidebar-container">
 
       <div class="sidebar-sticky">
+<div class="sidebar-logo-container">
+  <a class="sidebar-brand" href="index.html"><img class="sidebar-logo" src="https://www.gagolewski.com/_static/img/genieclust.png" alt="Logo"/></a>
+</div>
 
 <span class="sidebar-brand-text">
 <a class="sidebar-brand" href="index.html">genieclust</a>
@@ -537,7 +540,7 @@
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2023-10-29T14:58:24+1100.
+              Last updated on 2023-11-01T12:02:38+1100.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

docs/genieclust_internal.html

@@ -160,6 +160,9 @@
     <div class="sidebar-container">
 
       <div class="sidebar-sticky">
+<div class="sidebar-logo-container">
+  <a class="sidebar-brand" href="index.html"><img class="sidebar-logo" src="https://www.gagolewski.com/_static/img/genieclust.png" alt="Logo"/></a>
+</div>
 
 <span class="sidebar-brand-text">
 <a class="sidebar-brand" href="index.html">genieclust</a>
@@ -621,7 +624,7 @@
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2023-10-29T14:58:24+1100.
+              Last updated on 2023-11-01T12:02:38+1100.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

docs/genieclust_plots.html

@@ -160,6 +160,9 @@
     <div class="sidebar-container">
 
       <div class="sidebar-sticky">
+<div class="sidebar-logo-container">
+  <a class="sidebar-brand" href="index.html"><img class="sidebar-logo" src="https://www.gagolewski.com/_static/img/genieclust.png" alt="Logo"/></a>
+</div>
 
 <span class="sidebar-brand-text">
 <a class="sidebar-brand" href="index.html">genieclust</a>
@@ -440,7 +443,7 @@
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2023-10-29T14:58:24+1100.
+              Last updated on 2023-11-01T12:02:38+1100.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

docs/genieclust_tools.html

@@ -160,6 +160,9 @@
     <div class="sidebar-container">
 
       <div class="sidebar-sticky">
+<div class="sidebar-logo-container">
+  <a class="sidebar-brand" href="index.html"><img class="sidebar-logo" src="https://www.gagolewski.com/_static/img/genieclust.png" alt="Logo"/></a>
+</div>
 
 <span class="sidebar-brand-text">
 <a class="sidebar-brand" href="index.html">genieclust</a>
@@ -462,7 +465,7 @@
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2023-10-29T14:58:24+1100.
+              Last updated on 2023-11-01T12:02:38+1100.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

docs/genindex.html

@@ -158,6 +158,9 @@
     <div class="sidebar-container">
 
       <div class="sidebar-sticky">
+<div class="sidebar-logo-container">
+  <a class="sidebar-brand" href="index.html"><img class="sidebar-logo" src="https://www.gagolewski.com/_static/img/genieclust.png" alt="Logo"/></a>
+</div>
 
 <span class="sidebar-brand-text">
 <a class="sidebar-brand" href="index.html">genieclust</a>
@@ -597,7 +600,7 @@ <h2>W</h2>
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2023-10-29T14:58:24+1100.
+              Last updated on 2023-11-01T12:02:38+1100.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

docs/index.html

@@ -160,6 +160,9 @@
     <div class="sidebar-container">
 
       <div class="sidebar-sticky">
+<div class="sidebar-logo-container">
+  <a class="sidebar-brand" href="#"><img class="sidebar-logo" src="https://www.gagolewski.com/_static/img/genieclust.png" alt="Logo"/></a>
+</div>
 
 <span class="sidebar-brand-text">
 <a class="sidebar-brand" href="#">genieclust</a>
@@ -403,37 +406,6 @@ <h2>Contributing<a class="headerlink" href="#contributing" title="Link to this h
 <div class="toctree-wrapper compound">
 </div>
 <div class="toctree-wrapper compound">
-<p class="caption" role="heading"><span class="caption-text">Examples and Tutorials</span></p>
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="weave/basics.html">Basics</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="weave/basics.html#breaking-the-ice">Breaking the Ice</a></li>
-<li class="toctree-l2"><a class="reference internal" href="weave/basics.html#a-comparison-with-k-means">A Comparison with k-means</a></li>
-<li class="toctree-l2"><a class="reference internal" href="weave/basics.html#a-comparison-with-hdbscan">A Comparison with HDBSCAN*</a></li>
-<li class="toctree-l2"><a class="reference internal" href="weave/basics.html#dendrograms">Dendrograms</a></li>
-<li class="toctree-l2"><a class="reference internal" href="weave/basics.html#further-reading">Further Reading</a></li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="weave/sklearn_toy_example.html">Comparing Algorithms on Toy Datasets</a></li>
-<li class="toctree-l1"><a class="reference internal" href="weave/benchmarks_ar.html">Benchmarks (How Good Is It?)</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="weave/benchmarks_ar.html#small-datasets">Small Datasets</a></li>
-<li class="toctree-l2"><a class="reference internal" href="weave/benchmarks_ar.html#large-datasets">Large Datasets</a></li>
-<li class="toctree-l2"><a class="reference internal" href="weave/benchmarks_ar.html#summary">Summary</a></li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="weave/timings.html">Timings (How Fast Is It?)</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="weave/timings.html#large-datasets">Large Datasets</a></li>
-<li class="toctree-l2"><a class="reference internal" href="weave/timings.html#timings-as-a-function-of-n-and-d">Timings as a Function of <code class="docutils literal notranslate"><span class="pre">n</span></code> and <code class="docutils literal notranslate"><span class="pre">d</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="weave/timings.html#timings-as-a-function-of-the-number-of-threads">Timings as a Function of the Number of Threads</a></li>
-<li class="toctree-l2"><a class="reference internal" href="weave/timings.html#summary">Summary</a></li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="weave/noise.html">Clustering with Noise Points Detection</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="weave/noise.html#smoothing-factor">Smoothing Factor</a></li>
-<li class="toctree-l2"><a class="reference internal" href="weave/noise.html#a-comparision-with-hdbscan">A Comparision with HDBSCAN*</a></li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="weave/r.html">R Interface Examples</a></li>
-</ul>
 </div>
 <!--
 weave/sparse
@@ -442,28 +414,10 @@ <h2>Contributing<a class="headerlink" href="#contributing" title="Link to this h
 which cannot be installed currently (hasn't been updated for a while)
 -->
 <div class="toctree-wrapper compound">
-<p class="caption" role="heading"><span class="caption-text">API Documentation</span></p>
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="genieclust.html">Python Package <cite>genieclust</cite> Reference</a></li>
-<li class="toctree-l1"><a class="reference internal" href="rapi.html">R Package <em>genieclust</em> Reference</a></li>
-</ul>
 </div>
 <div class="toctree-wrapper compound">
-<p class="caption" role="heading"><span class="caption-text">See Also</span></p>
-<ul>
-<li class="toctree-l1"><a class="reference external" href="https://clustering-benchmarks.gagolewski.com">Clustering Benchmarks</a></li>
-<li class="toctree-l1"><a class="reference external" href="https://datawranglingpy.gagolewski.com/">Minimalist Data Wrangling in Python</a></li>
-<li class="toctree-l1"><a class="reference external" href="https://deepr.gagolewski.com">Deep R Programming</a></li>
-</ul>
 </div>
 <div class="toctree-wrapper compound">
-<p class="caption" role="heading"><span class="caption-text">Appendix</span></p>
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="news.html">Changelog</a></li>
-<li class="toctree-l1"><a class="reference internal" href="weave/benchmarks_details.html">Benchmarks — Detailed Results</a></li>
-<li class="toctree-l1"><a class="reference internal" href="weave/benchmarks_approx.html">Benchmarks — Approximate Method</a></li>
-<li class="toctree-l1"><a class="reference internal" href="z_bibliography.html">References</a></li>
-</ul>
 </div>
 <!--
 Indices and Tables
@@ -501,7 +455,7 @@ <h2>Contributing<a class="headerlink" href="#contributing" title="Link to this h
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2023-10-29T14:58:24+1100.
+              Last updated on 2023-11-01T12:02:38+1100.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

docs/news.html

@@ -160,6 +160,9 @@
     <div class="sidebar-container">
 
       <div class="sidebar-sticky">
+<div class="sidebar-logo-container">
+  <a class="sidebar-brand" href="index.html"><img class="sidebar-logo" src="https://www.gagolewski.com/_static/img/genieclust.png" alt="Logo"/></a>
+</div>
 
 <span class="sidebar-brand-text">
 <a class="sidebar-brand" href="index.html">genieclust</a>
@@ -469,7 +472,7 @@ <h2>0.1a2 (2018-05-23)<a class="headerlink" href="#a2-2018-05-23" title="Link to
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2023-10-29T14:58:24+1100.
+              Last updated on 2023-11-01T12:02:38+1100.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

docs/py-modindex.html

@@ -158,6 +158,9 @@
     <div class="sidebar-container">
 
       <div class="sidebar-sticky">
+<div class="sidebar-logo-container">
+  <a class="sidebar-brand" href="index.html"><img class="sidebar-logo" src="https://www.gagolewski.com/_static/img/genieclust.png" alt="Logo"/></a>
+</div>
 
 <span class="sidebar-brand-text">
 <a class="sidebar-brand" href="index.html">genieclust</a>
@@ -331,7 +334,7 @@ <h1>Python Module Index</h1>
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2023-10-29T14:58:24+1100.
+              Last updated on 2023-11-01T12:02:38+1100.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>

docs/rapi.html

@@ -160,6 +160,9 @@
     <div class="sidebar-container">
 
       <div class="sidebar-sticky">
+<div class="sidebar-logo-container">
+  <a class="sidebar-brand" href="index.html"><img class="sidebar-logo" src="https://www.gagolewski.com/_static/img/genieclust.png" alt="Logo"/></a>
+</div>
 
 <span class="sidebar-brand-text">
 <a class="sidebar-brand" href="index.html">genieclust</a>
@@ -318,7 +321,7 @@ <h1>R Package <em>genieclust</em> Reference<a class="headerlink" href="#r-packag
               Some rights reserved. Licensed under <a href='https://creativecommons.org/licenses/by-nc-nd/4.0/'>CC BY-NC-ND 4.0</a>.
               Built with <a href="https://sphinx-doc.org/">Sphinx</a>
               and a customised <a href="https://github.com/pradyunsg/furo">Furo</a> theme.
-              Last updated on 2023-10-29T14:58:24+1100.
+              Last updated on 2023-11-01T12:02:38+1100.
               This site will never display any ads: it is a non-profit project.
               It does not collect any data.
             </div>