feat: add linkml schemas for data source files (#269, #270) #198

	name: Run checks
	on: [pull_request]

	jobs:
	run-checks:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: actions/setup-node@v4
	with:
	node-version: "20.10.0"
	- name: Cache npm cache
	uses: actions/cache@v4
	with:
	path: ~/.npm
	key: ${{ runner.os }}-node-${{ hashFiles('package-lock.json') }}
	- name: Install dependencies
	run: npm ci
	- name: Next.js Build
	run: npm run build-prod:data-portal
	- name: Run Prettier
	run: npm run check-format
	- name: Run Linter (ESLint)
	run: npm run lint
	- name: Type Check
	run: npx tsc --noEmit

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.12.4"
	cache: "pip"
	cache-dependency-path: "./catalog/build/requirements.txt"
	- name: Install Python dependencies
	run: pip install -r ./catalog/build/requirements.txt
	- name: Run linkml-lint
	run: linkml-lint ./catalog/schema --validate --verbose
	- name: Test LinkML Python generation
	run: \|
	for name in schema assemblies workflow_categories workflows
	do
	gen-python "./catalog/schema/$name.yaml"
	done
	- name: Validate catalog files
	run: \|
	for name in assemblies workflow_categories workflows
	do
	linkml-validate -s "./catalog/schema/$name.yaml" "./catalog/source/$name.yml"
	done

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