Change codecov from master to main

.github/workflows/CI-unittests.yml

@@ -49,6 +49,7 @@ jobs:
           - os: ubuntu-latest
             python-version: "3.11"
             install-method: mamba
+            extra-args: ["codecov"]
 
           - os: ubuntu-latest
             python-version: "3.11"
@@ -96,17 +97,33 @@ jobs:
         run: |
           tee -a ~/.bash_profile <<<'export PATH="$pythonLocation/bin:$PATH"'
 
-      - name: Python dependencies
+      - name: Python dependencies (pip)
+        if: matrix.install-method == 'pip'
         run: |
-          python --version
           pip install '.[tests,dev,doc]'
 
+      - name: Python dependencies (mamba)
+        if: matrix.install-method == 'mamba'
+        run: |
+          pip install -e '.[tests,dev,doc]'
+
       - name: flake8
         run: |
           flake8 --max-line-length 100 --per-file-ignores="_version.py:F401 E501" .
 
       - name: Unit tests
         shell: bash -l {0}
-        run: pytest --durations=10 --color=yes --cov --cov-report=xml
+        run: |
+          pytest --durations=10 --color=yes
+
+      - name: Upload coverage report to codecov
+        uses: codecov/codecov-action@v3
+        if: contains(matrix.extra-args, 'codecov')
+        with:
+          token: ${{ secrets.CODECOV_SIMTOOLS_TOKEN }}
 
-      - uses: codecov/[email protected]
+      - name: Archive code coverage results
+        uses: actions/upload-artifact@v3
+        with:
+          name: code-coverage-report
+          path: coverage.xml

README.rst

@@ -26,7 +26,7 @@ simtools
 .. image:: https://app.codacy.com/project/badge/Grade/a3f19df7454844059341edd0769e02a7
    :target: https://app.codacy.com/gh/gammasim/simtools/dashboard?utm_source=gh&utm_medium=referral&utm_content=&utm_campaign=Badge_grade
 
-.. image:: https://codecov.io/gh/gammasim/simtools/branch/master/graph/badge.svg?token=AYAIRPARCH
+.. image:: https://codecov.io/gh/gammasim/simtools/graph/badge.svg?token=AYAIRPARCH
    :target: https://codecov.io/gh/gammasim/simtools
 
 Simulation tools and applications for the `Cherenkov Telescope Array (CTAO) <https://www.cta-observatory.org>`_.

pyproject.toml

@@ -626,8 +626,8 @@ redefining-builtins-modules = ["six.moves", "past.builtins", "future.builtins",
 
 [tool.pytest.ini_options]
 minversion="6.0"
-norecursedirs=["build", "docs/_build"]
-addopts="-v"
+norecursedirs=["build", "docs/_build", "simtools/applications"]
+addopts="-v --cov=simtools --cov-report=xml --cov-report=term"
 testpaths="tests/unit_tests/"
 # Ignore the warning about fontTools.misc.py23
 filterwarnings="ignore:The py23 module has been deprecated:DeprecationWarning"

simtools/layout/layout_array.py

@@ -71,6 +71,7 @@ def __init__(
         self.telescope_list_file = None
         self._telescope_list = []
         self._epsg = None
+
         if telescope_list_file is None:
             self._initialize_coordinate_systems(layout_center_data)
             self._initialize_corsika_telescope(corsika_telescope_data)