attempt pyrodigal_gv multithreaded thanks martin pooltest 2 #95

	name: CI

	on: [push,pull_request]

	jobs:
	tests:
	name: "Python ${{ matrix.python-version }}"
	runs-on: ${{ matrix.os }}

	defaults:
	run:
	shell: bash -el {0}

	strategy:
	matrix:
	os: [macos-latest, ubuntu-latest]
	python-version: ["3.9"]

	steps:
	- uses: "actions/checkout@v3"
	with:
	fetch-depth: 0

	# Setup env
	- uses: "conda-incubator/setup-miniconda@v2"
	with:
	activate-environment: pharokka_env
	environment-file: environment.yml
	python-version: ${{ matrix.python-version }}
	auto-activate-base: false
	miniforge-variant: Mambaforge
	channels: conda-forge,bioconda,defaults
	channel-priority: strict
	auto-update-conda: true
	- name: Install pharokka
	shell: bash -l {0}
	run: \|
	mamba install python=${{ matrix.python-version }}
	python -m pip install --upgrade pip
	pip install -e .
	- name: Run tests and collect coverage
	run: pytest --cov=./ --cov-report=xml
	- name: Upload coverage reports to Codecov
	uses: codecov/codecov-action@v3
	env:
	CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

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