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add check for source annotation property on xref axioms #28417

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balhoff opened this issue Jul 8, 2024 · 2 comments
Open

add check for source annotation property on xref axioms #28417

balhoff opened this issue Jul 8, 2024 · 2 comments
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@balhoff
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balhoff commented Jul 8, 2024

xrefs axioms should only be annotated with oio:source and skos values.

Related to #28404.

@sjm41
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sjm41 commented Jul 17, 2024

FYI, I see 4 such examples of this error in the current ontology:

id: GO:0004764
name: shikimate 3-dehydrogenase (NADP+) activity
xref: EC:1.1.1.282 {comment="skos:broadMatch"}
(I'm fixing this one as part of #28514)

id: GO:0018423
name: protein C-terminal leucine carboxyl O-methyltransferase activity
xref: RHEA:48544 {comment="skos:narrowMatch"}

id: GO:0047224
name: acetylgalactosaminyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity
xref: RHEA:46884 {comment="skos:narrowMatch"}

id: GO:0051698
name: saccharopine oxidase activity
xref: RHEA:28210 {comment="skos:exactMatch"}

pgaudet added a commit that referenced this issue Jul 17, 2024
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pgaudet commented Jul 17, 2024

I fixed the 4 problematix xref types.

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