Issue 29334

[pgaudet]

No description provided.

[github-actions]

Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-11-29/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-11-29/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

3-beta-hydroxysteroid 3-dehydrogenase (NADP+) activity http://purl.obolibrary.org/obo/GO_0000253

Removed

• 3-beta-hydroxysteroid 3-dehydrogenase (NADP+) activity definition "Catalysis of the reaction: a 3-beta-hydroxyl sterol + NADP+ = a 3-keto sterol + NADPH + H+."

  • database_cross_reference "GOC:mah"

  • database_cross_reference "EC:1.1.1.270"

  • database_cross_reference "PMID:9811880"

Added

• 3-beta-hydroxysteroid 3-dehydrogenase (NADP+) activity definition "Catalysis of the reaction: a 3-beta-hydroxysteroid + NADP+ = a 3-oxosterol + NADPH + H+."

  • database_cross_reference "GOC:mah"

  • database_cross_reference "EC:1.1.1.270"

  • database_cross_reference "PMID:9811880"

ATP-dependent DNA/DNA annealing activity http://purl.obolibrary.org/obo/GO_0036310

Removed

• ATP-dependent DNA/DNA annealing activity SubClassOf ATP-dependent activity

Added

• ATP-dependent DNA/DNA annealing activity term tracker item "https://github.com/geneontology/go-ontology/issues/29334"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• ATP-dependent DNA/DNA annealing activity SubClassOf ATP-dependent activity, acting on DNA

obsolete UDP-N-acetylgalactosamine:N-acetylneuraminyl-alpha-2,3-galactosyl-beta-R 1,4-N-acetylgalactosaminyltransferase activity http://purl.obolibrary.org/obo/GO_0033208

Removed

• obsolete UDP-N-acetylgalactosamine:N-acetylneuraminyl-alpha-2,3-galactosyl-beta-R 1,4-N-acetylgalactosaminyltransferase activity label "UDP-N-acetylgalactosamine:N-acetylneuraminyl-alpha-2,3-galactosyl-beta-R 1,4-N-acetylgalactosaminyltransferase activity"

• obsolete UDP-N-acetylgalactosamine:N-acetylneuraminyl-alpha-2,3-galactosyl-beta-R 1,4-N-acetylgalactosaminyltransferase activity definition "Catalysis of the reaction: UDP-N-acetylgalactosamine + N-acetylneuraminyl-alpha-2,3-galactosyl-beta-oligosaccharide = UDP + N-acetylgalactosaminyl-N-acetylneuraminyl-alpha-2,3-galactosyl-beta-oligosaccharide."

  • database_cross_reference "GOC:mah"

  • database_cross_reference "PMID:16024623"

  • database_cross_reference "PMID:12678917"

• obsolete UDP-N-acetylgalactosamine:N-acetylneuraminyl-alpha-2,3-galactosyl-beta-R 1,4-N-acetylgalactosaminyltransferase activity SubClassOf obsolete beta-1,4-N-acetylgalactosaminyltransferase activity

Added

• obsolete UDP-N-acetylgalactosamine:N-acetylneuraminyl-alpha-2,3-galactosyl-beta-R 1,4-N-acetylgalactosaminyltransferase activity label "obsolete UDP-N-acetylgalactosamine:N-acetylneuraminyl-alpha-2,3-galactosyl-beta-R 1,4-N-acetylgalactosaminyltransferase activity"

• obsolete UDP-N-acetylgalactosamine:N-acetylneuraminyl-alpha-2,3-galactosyl-beta-R 1,4-N-acetylgalactosaminyltransferase activity term tracker item "https://github.com/geneontology/go-ontology/issues/18752"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• obsolete UDP-N-acetylgalactosamine:N-acetylneuraminyl-alpha-2,3-galactosyl-beta-R 1,4-N-acetylgalactosaminyltransferase activity comment "This term was obsoleted because it represents a specific substrate of N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity ; GO:0033842."

• obsolete UDP-N-acetylgalactosamine:N-acetylneuraminyl-alpha-2,3-galactosyl-beta-R 1,4-N-acetylgalactosaminyltransferase activity term replaced by "GO:0033842"

• obsolete UDP-N-acetylgalactosamine:N-acetylneuraminyl-alpha-2,3-galactosyl-beta-R 1,4-N-acetylgalactosaminyltransferase activity definition "OBSOLETE. Catalysis of the reaction: UDP-N-acetylgalactosamine + N-acetylneuraminyl-alpha-2,3-galactosyl-beta-oligosaccharide = UDP + N-acetylgalactosaminyl-N-acetylneuraminyl-alpha-2,3-galactosyl-beta-oligosaccharide."

  • database_cross_reference "GOC:mah"

  • database_cross_reference "PMID:16024623"

  • database_cross_reference "PMID:12678917"

• obsolete UDP-N-acetylgalactosamine:N-acetylneuraminyl-alpha-2,3-galactosyl-beta-R 1,4-N-acetylgalactosaminyltransferase activity deprecated true

obsolete beta-1,4-N-acetylgalactosaminyltransferase activity http://purl.obolibrary.org/obo/GO_0033207

Removed

• obsolete beta-1,4-N-acetylgalactosaminyltransferase activity definition "Catalysis of the transfer of an N-acetylgalactosaminyl residue from UDP-N-acetyl-galactosamine to an acceptor molecule, forming a beta-1,4 linkage."

  • database_cross_reference "GOC:mah"

• obsolete beta-1,4-N-acetylgalactosaminyltransferase activity label "beta-1,4-N-acetylgalactosaminyltransferase activity"

• obsolete beta-1,4-N-acetylgalactosaminyltransferase activity SubClassOf acetylgalactosaminyltransferase activity

Added

• obsolete beta-1,4-N-acetylgalactosaminyltransferase activity definition "OBSOLETE. Catalysis of the transfer of an N-acetylgalactosaminyl residue from UDP-N-acetyl-galactosamine to an acceptor molecule, forming a beta-1,4 linkage."

  • database_cross_reference "GOC:mah"

• obsolete beta-1,4-N-acetylgalactosaminyltransferase activity term tracker item "https://github.com/geneontology/go-ontology/issues/18752"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• obsolete beta-1,4-N-acetylgalactosaminyltransferase activity term replaced by "GO:0033842"

• obsolete beta-1,4-N-acetylgalactosaminyltransferase activity deprecated true

• obsolete beta-1,4-N-acetylgalactosaminyltransferase activity label "obsolete beta-1,4-N-acetylgalactosaminyltransferase activity"

• obsolete beta-1,4-N-acetylgalactosaminyltransferase activity comment "This term was obsoleted because it represents the same reaction as N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity ; GO:0033842."