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msgpack - ValueError: 2369781118 exceeds max_bin_len(2147483647 #262

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RichardScottOZ opened this issue Jan 22, 2024 · 1 comment
Open

msgpack - ValueError: 2369781118 exceeds max_bin_len(2147483647 #262

RichardScottOZ opened this issue Jan 22, 2024 · 1 comment

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@RichardScottOZ
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RichardScottOZ commented Jan 22, 2024 •
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Attempted join on around 250K polygons to 900K points on a Localcluster - the other way around did work a couple of days ago - haven't tried a cold machine start or cluster restart as yet - I saw an error like this from 2021 for dask that someone said an update fixed for a large graph

[realised I was only using a smaller one - need to do 3M] - presumably can probably get this to work currently chopping off the extra 10% or so needed to stay under that long int boundary.

C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\client.py:3162: UserWarning: Sending large graph of size 2.21 GiB.
This may cause some slowdown.
Consider scattering data ahead of time and using futures.
  warnings.warn(
---------------------------------------------------------------------------
CancelledError                            Traceback (most recent call last)
File <timed exec>:1

File ~\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\dask\base.py:379, in DaskMethodsMixin.compute(self, **kwargs)
    355 def compute(self, **kwargs):
    356     """Compute this dask collection
    357 
    358     This turns a lazy Dask collection into its in-memory equivalent.
   (...)
    377     dask.compute
    378     """
--> 379     (result,) = compute(self, traverse=False, **kwargs)
    380     return result

File ~\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\dask\base.py:665, in compute(traverse, optimize_graph, scheduler, get, *args, **kwargs)
    662     postcomputes.append(x.__dask_postcompute__())
    664 with shorten_traceback():
--> 665     results = schedule(dsk, keys, **kwargs)
    667 return repack([f(r, *a) for r, (f, a) in zip(results, postcomputes)])

File ~\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\client.py:2244, in Client._gather(self, futures, errors, direct, local_worker)
   2242     else:
   2243         raise exception.with_traceback(traceback)
-> 2244     raise exc
   2245 if errors == "skip":
   2246     bad_keys.add(key)

CancelledError: ('sjoin-38ea83416d6236ee710acd39e46f004c', 7)
2024-01-22 13:07:30,743 - distributed.core - ERROR - Exception while handling op register-client
Traceback (most recent call last):
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\core.py", line 969, in _handle_comm
    result = await result
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\scheduler.py", line 5602, in add_client
    await self.handle_stream(comm=comm, extra={"client": client})
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\core.py", line 1024, in handle_stream
    msgs = await comm.read()
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\comm\tcp.py", line 248, in read
    msg = await from_frames(
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\comm\utils.py", line 78, in from_frames
    res = _from_frames()
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\comm\utils.py", line 61, in _from_frames
    return protocol.loads(
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\protocol\core.py", line 175, in loads
    return msgpack.loads(
  File "msgpack/_unpacker.pyx", line 194, in msgpack._cmsgpack.unpackb
ValueError: 2369813480 exceeds max_bin_len(2147483647)
Task exception was never retrieved
future: <Task finished name='Task-1911149' coro=<Server._handle_comm() done, defined at C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\core.py:875> exception=ValueError('2369813480 exceeds max_bin_len(2147483647)')>
Traceback (most recent call last):
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\core.py", line 969, in _handle_comm
    result = await result
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\scheduler.py", line 5602, in add_client
    await self.handle_stream(comm=comm, extra={"client": client})
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\core.py", line 1024, in handle_stream
    msgs = await comm.read()
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\comm\tcp.py", line 248, in read
    msg = await from_frames(
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\comm\utils.py", line 78, in from_frames
    res = _from_frames()
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\comm\utils.py", line 61, in _from_frames
    return protocol.loads(
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\protocol\core.py", line 175, in loads
    return msgpack.loads(
  File "msgpack/_unpacker.pyx", line 194, in msgpack._cmsgpack.unpackb
ValueError: 2369813480 exceeds max_bin_len(2147483647)
2024-01-22 13:13:07,709 - distributed.protocol.core - CRITICAL - Failed to deserialize
Traceback (most recent call last):
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\protocol\core.py", line 175, in loads
    return msgpack.loads(
  File "msgpack/_unpacker.pyx", line 194, in msgpack._cmsgpack.unpackb
ValueError: 2369781116 exceeds max_bin_len(2147483647)
2024-01-22 13:13:07,755 - distributed.core - ERROR - Exception while handling op register-client
Traceback (most recent call last):
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\core.py", line 969, in _handle_comm
    result = await result
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\scheduler.py", line 5602, in add_client
    await self.handle_stream(comm=comm, extra={"client": client})
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\core.py", line 1024, in handle_stream
    msgs = await comm.read()
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\comm\tcp.py", line 248, in read
    msg = await from_frames(
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\comm\utils.py", line 78, in from_frames
    res = _from_frames()
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\comm\utils.py", line 61, in _from_frames
    return protocol.loads(
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\protocol\core.py", line 175, in loads
    return msgpack.loads(
  File "msgpack/_unpacker.pyx", line 194, in msgpack._cmsgpack.unpackb
ValueError: 2369781116 exceeds max_bin_len(2147483647)
Task exception was never retrieved
future: <Task finished name='Task-2018400' coro=<Server._handle_comm() done, defined at C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\core.py:875> exception=ValueError('2369781116 exceeds max_bin_len(2147483647)')>
Traceback (most recent call last):
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\core.py", line 969, in _handle_comm
    result = await result
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\scheduler.py", line 5602, in add_client
    await self.handle_stream(comm=comm, extra={"client": client})
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\core.py", line 1024, in handle_stream
    msgs = await comm.read()
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\comm\tcp.py", line 248, in read
    msg = await from_frames(
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\comm\utils.py", line 78, in from_frames
    res = _from_frames()
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\comm\utils.py", line 61, in _from_frames
    return protocol.loads(
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\protocol\core.py", line 175, in loads
    return msgpack.loads(
  File "msgpack/_unpacker.pyx", line 194, in msgpack._cmsgpack.unpackb
ValueError: 2369781116 exceeds max_bin_len(2147483647)
2024-01-22 13:17:51,917 - distributed.protocol.core - CRITICAL - Failed to deserialize
Traceback (most recent call last):
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\protocol\core.py", line 175, in loads
    return msgpack.loads(
  File "msgpack/_unpacker.pyx", line 194, in msgpack._cmsgpack.unpackb
ValueError: 2369781118 exceeds max_bin_len(2147483647)
2024-01-22 13:17:51,965 - distributed.core - ERROR - Exception while handling op register-client
Traceback (most recent call last):
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\core.py", line 969, in _handle_comm
    result = await result
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\scheduler.py", line 5602, in add_client
    await self.handle_stream(comm=comm, extra={"client": client})
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\core.py", line 1024, in handle_stream
    msgs = await comm.read()
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\comm\tcp.py", line 248, in read
    msg = await from_frames(
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\comm\utils.py", line 78, in from_frames
    res = _from_frames()
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\comm\utils.py", line 61, in _from_frames
    return protocol.loads(
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\protocol\core.py", line 175, in loads
    return msgpack.loads(
  File "msgpack/_unpacker.pyx", line 194, in msgpack._cmsgpack.unpackb
ValueError: 2369781118 exceeds max_bin_len(2147483647)
Task exception was never retrieved
future: <Task finished name='Task-2222100' coro=<Server._handle_comm() done, defined at C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\core.py:875> exception=ValueError('2369781118 exceeds max_bin_len(2147483647)')>
Traceback (most recent call last):
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\core.py", line 969, in _handle_comm
    result = await result
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\scheduler.py", line 5602, in add_client
    await self.handle_stream(comm=comm, extra={"client": client})
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\core.py", line 1024, in handle_stream
    msgs = await comm.read()
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\comm\tcp.py", line 248, in read
    msg = await from_frames(
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\comm\utils.py", line 78, in from_frames
    res = _from_frames()
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\comm\utils.py", line 61, in _from_frames
    return protocol.loads(
  File "C:\Users\rscott\AppData\Local\miniconda3\envs\daskgeopandas\lib\site-packages\distributed\protocol\core.py", line 175, in loads
    return msgpack.loads(
  File "msgpack/_unpacker.pyx", line 194, in msgpack._cmsgpack.unpackb
ValueError: 2369781118 exceeds max_bin_len(2147483647)
@mrocklin
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mrocklin commented Jan 22, 2024 via email

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