fix edits

grubaughlab · Jun 28, 2024 · 86c810c · 86c810c
1 parent ae456fb
commit 86c810c
Showing 1 changed file with 6 additions and 6 deletions.
diff --git a/denv_pipeline/scripts/make_summary_files.py b/denv_pipeline/scripts/make_summary_files.py
@@ -205,13 +205,13 @@ def pull_low_coverage_seqs(config, all_coverage, high_coverage):
                 if "sylvatic" not in sero:
                     lst.append(cov)
 
-        in_order = sorted(lst, reverse=True)
-        if in_order[0] > (in_order[1] + 5):
-            top = [i for i in cov_dict if cov_dict[i]==in_order[0]][0]
-        else:
-            top = "NA"
+            in_order = sorted(lst, reverse=True)
+            if in_order[0] > (in_order[1] + 5):
+                top = [i for i in cov_dict if cov_dict[i]==in_order[0]][0]
+            else:
+                top = "NA"
 
-        top_call[name] = top
+            top_call[name] = top
 
         low_cov_seqs = set()
         depth = config["depth"]