Update README.md

README.md

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 Created by Verity Hill and Chrispin Chaguza, Grubaugh Lab
 
-This pipeline takes raw read data in the form of fastq files, maps them against provided bed files and then provides a series of outputs for further analysis including consensus sequences. 
+This pipeline takes raw Illumina read data in the form of fastq files, maps them against provided bed files and then provides a series of outputs for further analysis including consensus sequences. 
+The following pipeline works with ONT data: https://github.com/josephfauver/DENV_MinION_Script
 
 IMPORTANT: the bed files must correspond to the wet lab protocol that you used and the reference sequence used to generate them otherwise the sequences generated will be incorrect.