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bioAnno

Build Annotation package by using information from KEGG, NCBI, Ensembl and return OrgDb object such as org.Hs.eg.db.

Description

bioAnno provide wrap functions fromKEGG, fromEnsembl,fromNCBI and fromAnnoHub to build annotation package.

Installation

library(devtools)
install_github("guokai8/bioAnno")

Software Usage

library(bioAnno)
## build Annotation package by using fromKEGG
fromKEGG(species="hsa")
## which will build and install package "org.hsa.eg.db" which will include KEGG, GO annotation 
## build Annotation package by using fromEnsembl 
fromEnsembl(species="Human")
## build from AnnotationHub
fromAnnoHub(species="human")

Note

The bioAnno just a package for funs. bioAnno provide wrap function which help me to easily build annotation package. The fromAnnoHub function is ready to use.

Contact information

For any questions please contact [email protected]