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Update README.md
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behnam-yousefi authored Aug 13, 2024
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Expand Up @@ -7,7 +7,7 @@ epyc/Behnam/xenium-cgn/notebooks/06_domain_identification/adata/adata_nichepca_w
The columns related to the domain identification in ```aadata.obs``` are:

* ```nichepca_domain```: domains identified by *nichepca* including: *Glom.*, *Prox. Tubule*, and *DistaL Con. Tubule*.
* ```nichepca_domain_tuned```:
* ```nichepca_glom_no```:
* ```nichepca_domain_tuned```: contains the fine tuned domains *Glom.*, and should be used to detect glomerulus.
* ```nichepca_glom_no```: contains numbers corresponding to glomerulus indicated in ```nichepca_domain_tuned``` column.

sample label nichepca_glom_no
Moreover, the ```aadata.obs``` now has two extra columns as ```sample``` and ```label```.

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