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remove pairs

remove pairs #850

Workflow file for this run

.github/workflows/ci.yml at 0da9864
# for github runner images, see: https://github.com/actions/runner-images?tab=readme-ov-file#available-images
name: interpret-CI
on:
push:
pull_request:
workflow_dispatch:
inputs:
commit_id:
description: 'Commit ID (optional)'
required: false
schedule:
- cron: "0 12 * * *"
jobs:
bld:
strategy:
matrix:
include:
- name: linux_release_64
image: ubuntu-20.04
options: "-release_64"
asm: "-asm"
- name: linux_debug_64
image: ubuntu-20.04
options: "-debug_64"
asm: ""
- name: mac_release_64
image: macos-13 # macos-13 is an intel based mac
options: "-release_64"
asm: "-asm"
- name: mac_debug_64
image: macos-13 # macos-13 is an intel based mac
options: "-debug_64"
asm: ""
- name: mac_release_arm
image: macos-14 # macos-14 is an ARM based mac
options: "-release_arm"
asm: "-asm"
- name: mac_debug_arm
image: macos-14 # macos-14 is an ARM based mac
options: "-debug_arm"
asm: ""
- name: win_release_64
image: windows-2022
options: "-release_64"
asm: ""
- name: win_debug_64
image: windows-2022
options: "-debug_64"
asm: ""
runs-on: ${{ matrix.image }}
steps:
- name: Check out repo
uses: actions/checkout@v4
with:
ref: ${{ github.event_name == 'workflow_dispatch' && inputs.commit_id || github.sha }}
- name: Build on Windows
if: startsWith(matrix.image, 'windows')
run: |
$env:PATH += ';C:\Program Files\Microsoft Visual Studio\2022\Enterprise\MSBuild\Current\Bin'
$env:CudaToolkitDir = 'C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v11.2'
python -c "from urllib.request import urlretrieve; urlretrieve('https://developer.download.nvidia.com/compute/cuda/11.2.2/network_installers/cuda_11.2.2_win10_network.exe', 'cuda_11.2.2_win10_network.exe')"
./cuda_11.2.2_win10_network.exe -s nvcc_11.2 visual_studio_integration_11.2 cudart_11.2
if ($LASTEXITCODE -ne 0) {
Write-Error "cuda_11.2.2_win10_network.exe FAILED"
exit 201
}
./build.bat ${{ matrix.options }} ${{ matrix.asm }}
- name: Build on Linux
if: startsWith(matrix.image, 'ubuntu')
run: |
sudo apt --yes update
sudo apt --yes install nvidia-cuda-toolkit
/bin/sh ./build.sh ${{ matrix.options }} ${{ matrix.asm }}
- name: Build on macOS
if: startsWith(matrix.image, 'macos')
run: |
/bin/sh ./build.sh ${{ matrix.options }} ${{ matrix.asm }}
- name: Publish shared library
uses: actions/upload-artifact@v4
with:
name: libebm_${{ matrix.name }}
path: bld/lib
- name: Publish assembly
if: ${{ matrix.asm != '' }}
uses: actions/upload-artifact@v4
with:
name: asm_${{ matrix.name }}
path: bld/asm/
vis:
runs-on: ubuntu-20.04
steps:
- name: Check out repo
uses: actions/checkout@v4
with:
ref: ${{ github.event_name == 'workflow_dispatch' && inputs.commit_id || github.sha }}
- uses: actions/setup-node@v4
with:
node-version: '18.x'
- name: Build vis
run: |
cd shared/vis
npm install
npm run build-prod
- name: Publish interpret-inline.js library
uses: actions/upload-artifact@v4
with:
name: vis
path: shared/vis/dist
npm:
needs: [bdist] # bdist is not needed but slow this step down
runs-on: ubuntu-20.04
steps:
- name: Check out repo
uses: actions/checkout@v4
with:
ref: ${{ github.event_name == 'workflow_dispatch' && inputs.commit_id || github.sha }}
- uses: actions/setup-node@v4
with:
node-version: '18.x'
- name: Build npm package
run: |
cd shared/vis
npm install
npm run build-prod
npm pack
mkdir pkg
cp *.tgz pkg/
- name: Publish npm package
uses: actions/upload-artifact@v4
with:
name: npm
path: shared/vis/pkg
R:
needs: [bdist] # bdist is not needed but slow this step down
runs-on: ubuntu-20.04
steps:
- name: Check out repo
uses: actions/checkout@v4
with:
ref: ${{ github.event_name == 'workflow_dispatch' && inputs.commit_id || github.sha }}
- name: Build R package
run: |
cd R
sudo apt --yes update
sudo apt --yes install texlive-latex-base texlive-fonts-extra
Rscript build.R
- name: Display errors
if: failure()
run: cat bld/tmp/R/interpret.Rcheck/00install.out
- name: Publish R package
uses: actions/upload-artifact@v4
with:
name: R
path: bld/R
sdist:
runs-on: ubuntu-20.04
steps:
- name: Check out repo
uses: actions/checkout@v4
with:
ref: ${{ github.event_name == 'workflow_dispatch' && inputs.commit_id || github.sha }}
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: "3.9"
- name: Build sdist package
run: |
python -m pip install --upgrade pip setuptools wheel
cd python/interpret-core
python setup.py sdist -d ../../bld/sdist
cd ../interpret
python setup.py sdist -d ../../bld/sdist
- name: Publish sdist package
uses: actions/upload-artifact@v4
with:
name: sdist
path: bld/sdist
docs:
runs-on: ubuntu-20.04
needs: [sdist]
permissions:
checks: write
steps:
- name: Check out repo
uses: actions/checkout@v4
with:
ref: ${{ github.event_name == 'workflow_dispatch' && inputs.commit_id || github.sha }}
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: "3.9"
- name: Download sdist artifact
uses: actions/download-artifact@v4
with:
name: sdist
path: bld/sdist
- name: Build docs
id: build_docs
continue-on-error: true
run: |
python -m pip install --upgrade pip setuptools wheel
install_file=$(echo bld/sdist/interpret_core-*.tar.gz)
install_file=$(basename "$install_file" .tar.gz)
python -m pip install "bld/sdist/$install_file.tar.gz[debug,notebook,plotly,lime,sensitivity,shap,linear,treeinterpreter,aplr,dash,skoperules,testing]"
cd "docs/"
pip install -r requirements.txt
/bin/sh ./build.sh
- name: Mark step with a warning
if: ${{ steps.build_docs.outcome == 'failure' }}
uses: actions/github-script@v6
with:
script: |
github.rest.checks.create({
owner: context.repo.owner,
repo: context.repo.repo,
name: 'Failed building docs',
head_sha: context.sha,
status: 'completed',
conclusion: 'neutral'
})
- name: Publish docs
uses: actions/upload-artifact@v4
with:
name: docs
path: docs/interpret/_build/html/
bdist:
runs-on: ubuntu-20.04
needs: [bld, vis]
steps:
- name: Check out repo
uses: actions/checkout@v4
with:
ref: ${{ github.event_name == 'workflow_dispatch' && inputs.commit_id || github.sha }}
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: "3.9"
- name: Download libebm artifacts
uses: actions/download-artifact@v4
with:
pattern: libebm_*
merge-multiple: true
path: python/interpret-core/interpret/root/bld/lib/
- name: Download vis artifact
uses: actions/download-artifact@v4
with:
name: vis
path: python/interpret-core/interpret/root/bld/lib/
- name: Build bdist package
run: |
python -m pip install --upgrade pip setuptools wheel
cd python/interpret-core
python setup.py bdist_wheel -d ../../bld/bdist
cd ../interpret
python setup.py bdist_wheel -d ../../bld/bdist
- name: Publish bdist package
uses: actions/upload-artifact@v4
with:
name: bdist
path: bld/bdist
powerlift:
needs: [bdist] # bdist is not needed but slow this step down
runs-on: ubuntu-20.04
steps:
- name: Check out repo
uses: actions/checkout@v4
with:
ref: ${{ github.event_name == 'workflow_dispatch' && inputs.commit_id || github.sha }}
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: "3.9"
- name: Build powerlift package
run: |
python -m pip install --upgrade pip setuptools wheel
cd python/powerlift
python setup.py bdist_wheel -d ../../bld/powerlift
- name: Publish powerlift package
uses: actions/upload-artifact@v4
with:
name: powerlift
path: bld/powerlift
test_powerlift:
needs: [powerlift]
strategy:
matrix:
include:
- name: linux_312_python
python_ver: "3.12"
image: ubuntu-latest
# - name: mac_312_python
# python_ver: "3.12"
# image: macos-latest
- name: win_312_python
python_ver: "3.12"
image: windows-latest
runs-on: ${{ matrix.image }}
steps:
- name: Check out repo
uses: actions/checkout@v4
with:
ref: ${{ github.event_name == 'workflow_dispatch' && inputs.commit_id || github.sha }}
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python_ver }}
- name: Download powerlift artifact
uses: actions/download-artifact@v4
with:
name: powerlift
path: bld/powerlift
- name: pytest (non-win)
if: ${{ !startsWith(matrix.image, 'windows') }}
run: |
python -m pip install --upgrade pip setuptools wheel
install_file=$(echo bld/powerlift/powerlift-*.whl)
install_file=$(basename "$install_file" .whl)
python -m pip install "bld/powerlift/$install_file.whl[datasets,docker,postgres,mssql,aci,testing]"
mkdir -p "tmp/zqmr/t"
cp -R "python/powerlift/tests/" "tmp/zqmr/t/"
cd "tmp/zqmr/t"
python -m pytest -vv -n auto --cov=powerlift --cov-report=xml
- name: pytest (win)
if: ${{ startsWith(matrix.image, 'windows') }}
run: |
python -m pip install --upgrade pip setuptools wheel
$install_file = Get-ChildItem -Path "bld/powerlift" -Filter "powerlift-*.whl"
$install_file = $install_file.Name -replace '\.whl$', ''
$env:PATH += ';C:\Program Files\Microsoft Visual Studio\2022\Enterprise\MSBuild\Current\Bin'
python -m pip install "bld/powerlift/$install_file.whl[datasets,docker,postgres,mssql,aci,testing]"
New-Item -Path "tmp/zqmr/t" -ItemType Directory -Force
xcopy /E "python\powerlift\tests\*" "tmp\zqmr\t\"
cd "tmp/zqmr/t"
$env:PATH += ";$env:GeckoWebDriver"
python -m pytest -vv -n auto --cov=powerlift --cov-report=xml
testC:
needs: [bld]
strategy:
matrix:
include:
- name: linux_release_64
image: ubuntu-latest
options: "-release_64"
existing: "-existing_release_64"
scheduled: "-valgrind"
- name: linux_debug_64
image: ubuntu-latest
options: "-debug_64"
existing: "-existing_debug_64"
scheduled: "-valgrind"
- name: linux_release_32
image: ubuntu-latest
options: "-release_32"
existing: ""
scheduled: "-valgrind"
- name: linux_debug_32
image: ubuntu-latest
options: "-debug_32"
existing: ""
scheduled: "-valgrind"
- name: mac_release_64
image: macos-13 # macos-13 is an intel based mac
options: "-release_64"
existing: "-existing_release_64"
scheduled: ""
- name: mac_debug_64
image: macos-13 # macos-13 is an intel based mac
# don't use the existing debug library since we want to rebuild with asan
options: "-debug_64 -asan"
existing: ""
scheduled: ""
- name: mac_release_arm
image: macos-latest
options: "-release_arm"
existing: "-existing_release_arm"
scheduled: ""
- name: mac_debug_arm
image: macos-latest
# don't use the existing debug library since we want to rebuild with asan
options: "-debug_arm -asan"
existing: ""
scheduled: ""
- name: win_release_64
image: windows-latest
options: "-release_64"
existing: "-existing_release_64"
scheduled: "-analysis"
- name: win_debug_64
image: windows-latest
options: "-debug_64"
existing: "-existing_debug_64"
scheduled: ""
- name: win_release_32
image: windows-latest
options: "-release_32"
existing: ""
scheduled: "-analysis"
- name: win_debug_32
image: windows-latest
options: "-debug_32"
existing: ""
scheduled: ""
runs-on: ${{ matrix.image }}
steps:
- name: Check out repo
uses: actions/checkout@v4
with:
ref: ${{ github.event_name == 'workflow_dispatch' && inputs.commit_id || github.sha }}
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: "3.9"
- name: Download libebm artifact
if: ${{ matrix.existing != '' }}
uses: actions/download-artifact@v4
with:
name: libebm_${{ matrix.name }}
path: bld/lib
- name: mac test_native
if: ${{ startsWith(matrix.image, 'macos') }}
run: |
/bin/sh ./shared/libebm/tests/libebm_test.sh ${{ matrix.options }} ${{ matrix.existing }}
- name: linux test_native (Schedule)
if: ${{ startsWith(matrix.image, 'ubuntu') }}
run: |
/bin/sh ./shared/libebm/tests/libebm_test.sh ${{ matrix.options }} ${{ matrix.existing }} ${{ matrix.scheduled }}
- name: win test_native (Schedule)
if: ${{ startsWith(matrix.image, 'windows') }}
run: |
$env:PATH += ';C:\Program Files\Microsoft Visual Studio\2022\Enterprise\MSBuild\Current\Bin'
./shared/libebm/tests/libebm_test.bat ${{ matrix.options }} ${{ matrix.existing }} ${{ matrix.scheduled }}
testS:
needs: [sdist]
strategy:
matrix:
include:
- name: linux_39_python
python_ver: "3.9"
image: ubuntu-latest
- name: linux_310_python
python_ver: "3.10"
image: ubuntu-latest
- name: linux_311_python
python_ver: "3.11"
image: ubuntu-latest
- name: linux_312_python
python_ver: "3.12"
image: ubuntu-latest
- name: mac_39_python
python_ver: "3.9"
image: macos-latest
- name: mac_310_python
python_ver: "3.10"
image: macos-latest
- name: mac_311_python
python_ver: "3.11"
image: macos-latest
- name: mac_312_python
python_ver: "3.12"
image: macos-latest
- name: win_39_python
python_ver: "3.9"
image: windows-latest
- name: win_310_python
python_ver: "3.10"
image: windows-latest
- name: win_311_python
python_ver: "3.11"
image: windows-latest
- name: win_312_python
python_ver: "3.12"
image: windows-latest
runs-on: ${{ matrix.image }}
steps:
- name: Check out repo
uses: actions/checkout@v4
with:
ref: ${{ github.event_name == 'workflow_dispatch' && inputs.commit_id || github.sha }}
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python_ver }}
- name: Download sdist artifact
uses: actions/download-artifact@v4
with:
name: sdist
path: bld/sdist
- name: pytest (non-win)
if: ${{ !startsWith(matrix.image, 'windows') }}
run: |
python -m pip install --upgrade pip setuptools wheel
install_file=$(echo bld/sdist/interpret_core-*.tar.gz)
install_file=$(basename "$install_file" .tar.gz)
python -m pip install "bld/sdist/$install_file.tar.gz[debug,notebook,plotly,lime,sensitivity,shap,linear,treeinterpreter,aplr,dash,skoperules,testing]"
mkdir -p "tmp/zqmr/t"
tar -xzvf "bld/sdist/$install_file.tar.gz" -C "tmp/zqmr/t" "$install_file/tests"
cd "tmp/zqmr/t"
python -m pytest -vv -n auto --cov=interpret --cov-report=xml
- name: pytest (win)
if: ${{ startsWith(matrix.image, 'windows') }}
run: |
python -m pip install --upgrade pip setuptools wheel
$install_file = Get-ChildItem -Path "bld/sdist" -Filter "interpret_core-*.tar.gz"
$install_file = $install_file.Name -replace '\.tar\.gz$', ''
$env:PATH += ';C:\Program Files\Microsoft Visual Studio\2022\Enterprise\MSBuild\Current\Bin'
python -m pip install "bld/sdist/$install_file.tar.gz[debug,notebook,plotly,lime,sensitivity,shap,linear,treeinterpreter,aplr,dash,skoperules,testing]"
New-Item -Path "tmp/zqmr/t" -ItemType Directory -Force
tar -xzvf "bld/sdist/$install_file.tar.gz" -C "tmp/zqmr/t" "$install_file/tests"
cd "tmp/zqmr/t"
$env:PATH += ";$env:GeckoWebDriver"
python -m pytest -vv -n auto --cov=interpret --cov-report=xml
- name: Code coverage report
if: always()
uses: codecov/codecov-action@v4
with:
files: tmp/zqmr/t/coverage.xml
flags: sdist_${{ matrix.name }}
name: codecov_sdist_${{ matrix.name }}
token: ${{ secrets.CODECOV_TOKEN }}
testB:
needs: [bdist]
strategy:
matrix:
include:
- name: linux_39_python
python_ver: "3.9"
image: ubuntu-latest
- name: linux_310_python
python_ver: "3.10"
image: ubuntu-latest
- name: linux_311_python
python_ver: "3.11"
image: ubuntu-latest
- name: linux_312_python
python_ver: "3.12"
image: ubuntu-latest
- name: mac_39_python
python_ver: "3.9"
image: macos-latest
- name: mac_310_python
python_ver: "3.10"
image: macos-latest
- name: mac_311_python
python_ver: "3.11"
image: macos-latest
- name: mac_312_python
python_ver: "3.12"
image: macos-latest
- name: win_39_python
python_ver: "3.9"
image: windows-latest
- name: win_310_python
python_ver: "3.10"
image: windows-latest
- name: win_311_python
python_ver: "3.11"
image: windows-latest
- name: win_312_python
python_ver: "3.12"
image: windows-latest
runs-on: ${{ matrix.image }}
steps:
- name: Check out repo
uses: actions/checkout@v4
with:
ref: ${{ github.event_name == 'workflow_dispatch' && inputs.commit_id || github.sha }}
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python_ver }}
- name: Download bdist artifact
uses: actions/download-artifact@v4
with:
name: bdist
path: bld/bdist
- name: pytest (non-win)
if: ${{ !startsWith(matrix.image, 'windows') }}
run: |
python -m pip install --upgrade pip setuptools wheel
install_file=$(echo bld/bdist/interpret_core-*.whl)
install_file=$(basename "$install_file" .whl)
python -m pip install "bld/bdist/$install_file.whl[debug,notebook,plotly,lime,sensitivity,shap,linear,treeinterpreter,aplr,dash,skoperules,testing]"
mkdir -p "tmp/zqmr/t"
cp -R "python/interpret-core/tests/" "tmp/zqmr/t/"
cd "tmp/zqmr/t"
python -m pytest -vv -n auto --cov=interpret --cov-report=xml
- name: pytest (win)
if: ${{ startsWith(matrix.image, 'windows') }}
run: |
python -m pip install --upgrade pip setuptools wheel
$install_file = Get-ChildItem -Path "bld/bdist" -Filter "interpret_core-*.whl"
$install_file = $install_file.Name -replace '\.whl$', ''
$env:PATH += ';C:\Program Files\Microsoft Visual Studio\2022\Enterprise\MSBuild\Current\Bin'
python -m pip install "bld/bdist/$install_file.whl[debug,notebook,plotly,lime,sensitivity,shap,linear,treeinterpreter,aplr,dash,skoperules,testing]"
New-Item -Path "tmp/zqmr/t" -ItemType Directory -Force
xcopy /E "python\interpret-core\tests\*" "tmp\zqmr\t\"
cd "tmp/zqmr/t"
$env:PATH += ";$env:GeckoWebDriver"
python -m pytest -vv -n auto --cov=interpret --cov-report=xml
- name: Code coverage report
if: always()
uses: codecov/codecov-action@v4
with:
files: tmp/zqmr/t/coverage.xml
flags: bdist_${{ matrix.name }}
name: codecov_bdist_${{ matrix.name }}
token: ${{ secrets.CODECOV_TOKEN }}
testR:
needs: [R]
strategy:
matrix:
include:
- name: linux
image: ubuntu-latest
runs-on: ${{ matrix.image }}
steps:
- name: Set up R
uses: r-lib/actions/setup-r@v2
with:
r-version: 'latest'
- name: Download R artifact
uses: actions/download-artifact@v4
with:
name: R
path: bld/R
- name: R test
if: startsWith(matrix.image, 'ubuntu')
continue-on-error: true
run: |
sudo apt --yes update
sudo apt --yes install texlive-latex-base texlive-fonts-extra
install_file=$(echo bld/R/interpret_*.tar.gz)
install_file=$(basename "$install_file" .tar.gz)
cd bld/R
R CMD check --as-cran "$install_file.tar.gz"
- name: Display results
run: cat bld/R/interpret.Rcheck/00check.log
format_clang:
runs-on: ubuntu-latest
permissions:
checks: write
steps:
- name: Check out repo
uses: actions/checkout@v4
with:
ref: ${{ github.event_name == 'workflow_dispatch' && inputs.commit_id || github.sha }}
- name: Check C++ code formatting with clang-format
id: check_cpp
continue-on-error: true
run: |
wget -qO - https://apt.llvm.org/llvm-snapshot.gpg.key | sudo apt-key add -
echo "deb http://apt.llvm.org/jammy/ llvm-toolchain-jammy-16 main" | sudo tee /etc/apt/sources.list.d/llvm-toolchain-jammy-16.list
sudo apt --yes update
sudo apt --yes install clang-format-16
find shared/libebm \( -iname "*.cpp" -o -iname "*.h" -o -iname "*.hpp" \) | xargs clang-format-16 -i -style=file
git diff --exit-code
- name: Mark step with a warning
if: ${{ steps.check_cpp.outcome == 'failure' }}
uses: actions/github-script@v6
with:
script: |
github.rest.checks.create({
owner: context.repo.owner,
repo: context.repo.repo,
name: 'Failed clang formatting check',
head_sha: context.sha,
status: 'completed',
conclusion: 'neutral'
})
format_ruff:
runs-on: ubuntu-latest
permissions:
checks: write
steps:
- name: Check out repo
uses: actions/checkout@v4
with:
ref: ${{ github.event_name == 'workflow_dispatch' && inputs.commit_id || github.sha }}
- name: Check python matches ruff format
id: check_python
continue-on-error: true
run: |
cd python
python -m pip install --upgrade ruff
ruff format --check
- name: Mark step with a warning
if: ${{ steps.check_python.outcome == 'failure' }}
uses: actions/github-script@v6
with:
script: |
github.rest.checks.create({
owner: context.repo.owner,
repo: context.repo.repo,
name: 'Failed ruff formatting check',
head_sha: context.sha,
status: 'completed',
conclusion: 'neutral'
})