Add PaCMAP comparison article

jlmelville · Dec 18, 2024 · 9777a8c · 9777a8c
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diff --git a/_pkgdown.yml b/_pkgdown.yml
@@ -12,6 +12,7 @@ articles:
   contents:
   - articles/umap-examples
   - articles/pycompare
+  - articles/pacmap-comparison
   - articles/metric-learning
 - title: Theory
   desc: Exploring the theory and algorithm driving UMAP and its parameters.

diff --git a/vignettes/articles/img/pacmap-comparison/pacmap/coil100.png b/vignettes/articles/img/pacmap-comparison/pacmap/coil100.png
diff --git a/vignettes/articles/img/pacmap-comparison/pacmap/coil20.png b/vignettes/articles/img/pacmap-comparison/pacmap/coil20.png
diff --git a/vignettes/articles/img/pacmap-comparison/pacmap/curve2d.png b/vignettes/articles/img/pacmap-comparison/pacmap/curve2d.png
diff --git a/vignettes/articles/img/pacmap-comparison/pacmap/fashion.png b/vignettes/articles/img/pacmap-comparison/pacmap/fashion.png
diff --git a/vignettes/articles/img/pacmap-comparison/pacmap/hierarchical.png b/vignettes/articles/img/pacmap-comparison/pacmap/hierarchical.png
diff --git a/vignettes/articles/img/pacmap-comparison/pacmap/isoswiss.png b/vignettes/articles/img/pacmap-comparison/pacmap/isoswiss.png
diff --git a/vignettes/articles/img/pacmap-comparison/pacmap/macosko2015.png b/vignettes/articles/img/pacmap-comparison/pacmap/macosko2015.png
diff --git a/vignettes/articles/img/pacmap-comparison/pacmap/mammoth.png b/vignettes/articles/img/pacmap-comparison/pacmap/mammoth.png
diff --git a/vignettes/articles/img/pacmap-comparison/pacmap/mnist.png b/vignettes/articles/img/pacmap-comparison/pacmap/mnist.png
diff --git a/vignettes/articles/img/pacmap-comparison/pacmap/ng20pacmap.png b/vignettes/articles/img/pacmap-comparison/pacmap/ng20pacmap.png
diff --git a/vignettes/articles/img/pacmap-comparison/pacmap/scurvehole.png b/vignettes/articles/img/pacmap-comparison/pacmap/scurvehole.png
diff --git a/vignettes/articles/img/pacmap-comparison/pacmap/spheres.png b/vignettes/articles/img/pacmap-comparison/pacmap/spheres.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca/coil100.png b/vignettes/articles/img/pacmap-comparison/umap-pca/coil100.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca/coil20.png b/vignettes/articles/img/pacmap-comparison/umap-pca/coil20.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca/curve2d.png b/vignettes/articles/img/pacmap-comparison/umap-pca/curve2d.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca/fashion.png b/vignettes/articles/img/pacmap-comparison/umap-pca/fashion.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca/hierarchical.png b/vignettes/articles/img/pacmap-comparison/umap-pca/hierarchical.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca/isoswiss.png b/vignettes/articles/img/pacmap-comparison/umap-pca/isoswiss.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca/macosko2015.png b/vignettes/articles/img/pacmap-comparison/umap-pca/macosko2015.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca/mammoth.png b/vignettes/articles/img/pacmap-comparison/umap-pca/mammoth.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca/mnist.png b/vignettes/articles/img/pacmap-comparison/umap-pca/mnist.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca/ng20pacmap.png b/vignettes/articles/img/pacmap-comparison/umap-pca/ng20pacmap.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca/scurvehole.png b/vignettes/articles/img/pacmap-comparison/umap-pca/scurvehole.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca/spheres.png b/vignettes/articles/img/pacmap-comparison/umap-pca/spheres.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca100/coil100.png b/vignettes/articles/img/pacmap-comparison/umap-pca100/coil100.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca100/coil20.png b/vignettes/articles/img/pacmap-comparison/umap-pca100/coil20.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca100/curve2d.png b/vignettes/articles/img/pacmap-comparison/umap-pca100/curve2d.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca100/fashion.png b/vignettes/articles/img/pacmap-comparison/umap-pca100/fashion.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca100/hierarchical.png b/vignettes/articles/img/pacmap-comparison/umap-pca100/hierarchical.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca100/isoswiss.png b/vignettes/articles/img/pacmap-comparison/umap-pca100/isoswiss.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca100/macosko2015.png b/vignettes/articles/img/pacmap-comparison/umap-pca100/macosko2015.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca100/mammoth.png b/vignettes/articles/img/pacmap-comparison/umap-pca100/mammoth.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca100/mnist.png b/vignettes/articles/img/pacmap-comparison/umap-pca100/mnist.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca100/ng20pacmap.png b/vignettes/articles/img/pacmap-comparison/umap-pca100/ng20pacmap.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca100/scurvehole.png b/vignettes/articles/img/pacmap-comparison/umap-pca100/scurvehole.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap-pca100/spheres.png b/vignettes/articles/img/pacmap-comparison/umap-pca100/spheres.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap/coil100.png b/vignettes/articles/img/pacmap-comparison/umap/coil100.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap/coil20.png b/vignettes/articles/img/pacmap-comparison/umap/coil20.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap/curve2d.png b/vignettes/articles/img/pacmap-comparison/umap/curve2d.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap/fashion.png b/vignettes/articles/img/pacmap-comparison/umap/fashion.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap/hierarchical.png b/vignettes/articles/img/pacmap-comparison/umap/hierarchical.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap/isoswiss.png b/vignettes/articles/img/pacmap-comparison/umap/isoswiss.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap/macosko2015.png b/vignettes/articles/img/pacmap-comparison/umap/macosko2015.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap/mammoth.png b/vignettes/articles/img/pacmap-comparison/umap/mammoth.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap/mnist.png b/vignettes/articles/img/pacmap-comparison/umap/mnist.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap/ng20pacmap.png b/vignettes/articles/img/pacmap-comparison/umap/ng20pacmap.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap/scurvehole.png b/vignettes/articles/img/pacmap-comparison/umap/scurvehole.png
diff --git a/vignettes/articles/img/pacmap-comparison/umap/spheres.png b/vignettes/articles/img/pacmap-comparison/umap/spheres.png
diff --git a/vignettes/articles/pacmap-comparison.Rmd b/vignettes/articles/pacmap-comparison.Rmd