progress

.gitlab-ci.yml

@@ -41,6 +41,40 @@ status_pending:
   stage: prepare
   script: sh maintainer/gh_post_status.sh pending
 
+style:
+  <<: *global_job_definition
+  stage: build
+  dependencies: []
+  before_script:
+    - git config --global --add safe.directory ${CI_PROJECT_DIR}
+    - git submodule deinit .
+  script:
+    - sh maintainer/CI/fix_style.sh
+  tags:
+    - espresso
+    - no-cuda
+  variables:
+    GIT_SUBMODULE_STRATEGY: none
+  artifacts:
+    paths:
+    - style.patch
+    expire_in: 1 week
+    when: on_failure
+
+style_doxygen:
+  <<: *global_job_definition
+  stage: build
+  dependencies: []
+  script:
+    - mkdir build
+    - cd build
+    - cp ../maintainer/configs/maxset.hpp myconfig.hpp
+    - cmake .. -D ESPRESSO_BUILD_WITH_CUDA=ON -D ESPRESSO_BUILD_WITH_GSL=ON -D ESPRESSO_BUILD_WITH_HDF5=ON -D ESPRESSO_BUILD_WITH_SCAFACOS=ON -D ESPRESSO_BUILD_WITH_WALBERLA=ON -D ESPRESSO_BUILD_WITH_WALBERLA_FFT=ON -D ESPRESSO_BUILD_WITH_STOKESIAN_DYNAMICS=ON -D ESPRESSO_BUILD_WITH_CALIPER=ON
+    - sh ../maintainer/CI/dox_warnings.sh
+  tags:
+    - espresso
+    - no-cuda
+
 ### Builds without CUDA
 
 default:
@@ -402,6 +436,29 @@ empty:
     - cuda
     - numa
 
+check_sphinx:
+  <<: *global_job_definition
+  stage: additional_checks
+  needs:
+    - cuda12-maxset
+  when: on_success
+  script:
+    - cd ${CI_PROJECT_DIR}/build
+    - make -t && make sphinx
+    - make -j2 tutorials
+    - make check_utils
+    - bash ${CI_PROJECT_DIR}/maintainer/CI/doc_warnings.sh
+    - python3 ${CI_PROJECT_DIR}/maintainer/CI/jupyter_warnings.py
+  artifacts:
+    paths:
+    - build/doc/sphinx
+    expire_in: 1 week
+  tags:
+    - espresso
+    - cuda
+    - numa
+    - reuse-artifacts-same-arch
+
 run_tutorials:
   <<: *global_job_definition
   stage: additional_checks
@@ -430,6 +487,25 @@ run_tutorials:
   only:
     - schedules
 
+run_doxygen:
+  <<: *global_job_definition
+  stage: additional_checks
+  needs:
+    - cuda12-maxset
+  when: on_success
+  script:
+    - cd ${CI_PROJECT_DIR}/build
+    - make -t && make doxygen
+  artifacts:
+    paths:
+    - build/doc/doxygen
+    expire_in: 1 week
+  tags:
+    - espresso
+    - no-cuda
+    - numa
+    - reuse-artifacts-same-arch
+
 maxset_no_gpu:
   <<: *global_job_definition
   stage: additional_checks

maintainer/walberla_kernels/code_generation_context.py

@@ -26,7 +26,6 @@
 import pystencils_walberla
 
 
-
 def earmark_generated_kernels():
     """
     Add an earmark at the beginning of generated kernels to document the

maintainer/walberla_kernels/generate_lb_kernels.py

@@ -149,7 +149,9 @@ def paramlist(parameters, keys):
             params
         )
 
-    block_offsets = tuple(ps.TypedSymbol(f"block_offset_{i}", np.uint32) for i in range(3))
+    block_offsets = tuple(
+        ps.TypedSymbol(f"block_offset_{i}", np.uint32)
+        for i in range(3))
 
     # generate thermalized LB
     collision_rule_thermalized = lbmpy.creationfunctions.create_lb_collision_rule(

maintainer/walberla_kernels/lbmpy_espresso.py

@@ -46,11 +46,11 @@ def data_initialisation(self, direction):
         cell_args = [f"it.{direction}() + {bb_vec[i]}".replace('+ -', '-')
                      for i, direction in enumerate("xyz")]
         code = [
-          "auto const InitialisationAdditionalData = elementInitialiser(",
-          f"Cell({', '.join(cell_args)}), blocks, *block);",
-          "element.vel_0 = InitialisationAdditionalData[0];",
-          "element.vel_1 = InitialisationAdditionalData[1];",
-          "element.vel_2 = InitialisationAdditionalData[2];",
+            "auto const InitialisationAdditionalData = elementInitialiser(",
+            f"Cell({', '.join(cell_args)}), blocks, *block);",
+            "element.vel_0 = InitialisationAdditionalData[0];",
+            "element.vel_1 = InitialisationAdditionalData[1];",
+            "element.vel_2 = InitialisationAdditionalData[2];",
         ]
         return "\n".join(code)