Skip to content
This repository has been archived by the owner on Feb 18, 2024. It is now read-only.

Added support to write FixedSizeBinary to Avro #1118

Merged
merged 2 commits into from
Jun 28, 2022
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions src/array/fixed_size_binary/iterator.rs
Original file line number Diff line number Diff line change
Expand Up @@ -59,11 +59,11 @@ impl<'a> FixedSizeBinaryArray {
pub fn iter(
&'a self,
) -> ZipValidity<'a, &'a [u8], FixedSizeBinaryValuesIter<'a, FixedSizeBinaryArray>> {
zip_validity(self.iter_values(), self.validity.as_ref().map(|x| x.iter()))
zip_validity(self.values_iter(), self.validity.as_ref().map(|x| x.iter()))
}

/// Returns iterator over the values of [`FixedSizeBinaryArray`]
pub fn iter_values(&'a self) -> FixedSizeBinaryValuesIter<'a, FixedSizeBinaryArray> {
pub fn values_iter(&'a self) -> FixedSizeBinaryValuesIter<'a, FixedSizeBinaryArray> {
FixedSizeBinaryValuesIter::new(self)
}
}
Expand Down
2 changes: 1 addition & 1 deletion src/array/fixed_size_binary/mutable.rs
Original file line number Diff line number Diff line change
Expand Up @@ -235,7 +235,7 @@ impl MutableArray for MutableFixedSizeBinaryArray {
}

fn push_null(&mut self) {
self.values.resize(self.values.len() + self.size, 0);
self.push::<&[u8]>(None);
}

fn shrink_to_fit(&mut self) {
Expand Down
34 changes: 34 additions & 0 deletions src/io/avro/write/serialize.rs
Original file line number Diff line number Diff line change
Expand Up @@ -62,6 +62,29 @@ fn binary_optional<O: Offset>(array: &BinaryArray<O>) -> BoxSerializer {
))
}

fn fixed_size_binary_required(array: &FixedSizeBinaryArray) -> BoxSerializer {
Box::new(BufStreamingIterator::new(
array.values_iter(),
|x, buf| {
buf.extend_from_slice(x);
},
vec![],
))
}

fn fixed_size_binary_optional(array: &FixedSizeBinaryArray) -> BoxSerializer {
Box::new(BufStreamingIterator::new(
array.iter(),
|x, buf| {
util::zigzag_encode(x.is_some() as i64, buf).unwrap();
if let Some(x) = x {
buf.extend_from_slice(x);
}
},
vec![],
))
}

fn list_required<'a, O: Offset>(array: &'a ListArray<O>, schema: &AvroSchema) -> BoxSerializer<'a> {
let mut inner = new_serializer(array.values().as_ref(), schema);
let lengths = array
Expand Down Expand Up @@ -218,12 +241,18 @@ pub fn new_serializer<'a>(array: &'a dyn Array, schema: &AvroSchema) -> BoxSeria
(PhysicalType::LargeBinary, AvroSchema::Union(_)) => {
binary_optional::<i64>(array.as_any().downcast_ref().unwrap())
}
(PhysicalType::FixedSizeBinary, AvroSchema::Union(_)) => {
fixed_size_binary_optional(array.as_any().downcast_ref().unwrap())
}
(PhysicalType::Binary, AvroSchema::Bytes(_)) => {
binary_required::<i32>(array.as_any().downcast_ref().unwrap())
}
(PhysicalType::LargeBinary, AvroSchema::Bytes(_)) => {
binary_required::<i64>(array.as_any().downcast_ref().unwrap())
}
(PhysicalType::FixedSizeBinary, AvroSchema::Fixed(_)) => {
fixed_size_binary_required(array.as_any().downcast_ref().unwrap())
}

(PhysicalType::Primitive(PrimitiveType::Int32), AvroSchema::Union(_)) => {
let values = array
Expand Down Expand Up @@ -446,6 +475,7 @@ pub fn can_serialize(data_type: &DataType) -> bool {
match data_type.to_logical_type() {
List(inner) => return can_serialize(&inner.data_type),
LargeList(inner) => return can_serialize(&inner.data_type),
Struct(inner) => return inner.iter().all(|inner| can_serialize(&inner.data_type)),
_ => {}
};

Expand All @@ -454,8 +484,12 @@ pub fn can_serialize(data_type: &DataType) -> bool {
Boolean
| Int32
| Int64
| Float32
| Float64
| Decimal(_, _)
| Utf8
| Binary
| FixedSizeBinary(_)
| LargeUtf8
| LargeBinary
| Interval(IntervalUnit::MonthDayNano)
Expand Down
1 change: 0 additions & 1 deletion src/io/parquet/read/deserialize/binary/nested.rs
Original file line number Diff line number Diff line change
Expand Up @@ -126,7 +126,6 @@ impl<'a, O: Offset> utils::Decoder<'a> for BinaryDecoder<O> {
}
}
State::OptionalDictionary(page_validity, page_values) => {
println!("optional_dict");
let dict_values = page_values.dict.values();
let dict_offsets = page_values.dict.offsets();

Expand Down
58 changes: 32 additions & 26 deletions tests/it/io/avro/read.rs
Original file line number Diff line number Diff line change
Expand Up @@ -236,45 +236,51 @@ fn read_without_codec() -> Result<()> {
test(Codec::Null)
}

#[cfg(feature = "io_avro_compression")]
#[test]
fn read_deflate() -> Result<()> {
test(Codec::Deflate)
}

#[cfg(feature = "io_avro_compression")]
#[test]
fn read_snappy() -> Result<()> {
test(Codec::Snappy)
}

fn test_projected(projection: Vec<bool>) -> Result<()> {
let avro = write_avro(Codec::Null).unwrap();
#[test]
fn test_projected() -> Result<()> {
let expected = data();
let expected = expected
.into_arrays()
.into_iter()
.zip(projection.iter())
.filter_map(|x| if *x.1 { Some(x.0) } else { None })
.collect();
let expected = Chunk::new(expected);
let (_, expected_schema) = schema();
let expected_fields = expected_schema
.fields
.into_iter()
.zip(projection.iter())
.filter_map(|x| if *x.1 { Some(x.0) } else { None })
.collect::<Vec<_>>();
let expected_schema = Schema::from(expected_fields);

let (result, schema) = read_avro(&avro, Some(projection))?;
let avro = write_avro(Codec::Null).unwrap();

assert_eq!(schema, expected_schema);
assert_eq!(result, expected);
Ok(())
}
for i in 0..expected_schema.fields.len() {
let mut projection = vec![false; expected_schema.fields.len()];
projection[i] = true;

#[test]
fn read_projected() -> Result<()> {
test_projected(vec![
true, false, false, false, false, false, false, false, false, false, false, false,
])
let expected = expected
.clone()
.into_arrays()
.into_iter()
.zip(projection.iter())
.filter_map(|x| if *x.1 { Some(x.0) } else { None })
.collect();
let expected = Chunk::new(expected);

let expected_fields = expected_schema
.clone()
.fields
.into_iter()
.zip(projection.iter())
.filter_map(|x| if *x.1 { Some(x.0) } else { None })
.collect::<Vec<_>>();
let expected_schema = Schema::from(expected_fields);

let (result, schema) = read_avro(&avro, Some(projection))?;

assert_eq!(schema, expected_schema);
assert_eq!(result, expected);
}
Ok(())
}
6 changes: 6 additions & 0 deletions tests/it/io/avro/write.rs
Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,8 @@ pub(super) fn schema() -> Schema {
Field::new("date nullable", DataType::Date32, true),
Field::new("binary", DataType::Binary, false),
Field::new("binary nullable", DataType::Binary, true),
Field::new("fs binary", DataType::FixedSizeBinary(3), false),
Field::new("fs binary nullable", DataType::FixedSizeBinary(3), true),
Field::new("float32", DataType::Float32, false),
Field::new("float32 nullable", DataType::Float32, true),
Field::new("float64", DataType::Float64, false),
Expand Down Expand Up @@ -63,6 +65,8 @@ pub(super) fn data() -> Chunk<Box<dyn Array>> {
Box::new(Int32Array::from([Some(1), None]).to(DataType::Date32)),
Box::new(BinaryArray::<i32>::from_slice([b"foo", b"bar"])),
Box::new(BinaryArray::<i32>::from([Some(b"foo"), None])),
Box::new(FixedSizeBinaryArray::from_slice([[1, 2, 3], [1, 2, 3]])),
Box::new(FixedSizeBinaryArray::from([Some([1, 2, 3]), None])),
Box::new(PrimitiveArray::<f32>::from_slice([1.0, 2.0])),
Box::new(PrimitiveArray::<f32>::from([Some(1.0), None])),
Box::new(PrimitiveArray::<f64>::from_slice([1.0, 2.0])),
Expand Down Expand Up @@ -162,11 +166,13 @@ fn no_compression() -> Result<()> {
roundtrip(None)
}

#[cfg(feature = "io_avro_compression")]
#[test]
fn snappy() -> Result<()> {
roundtrip(Some(write::Compression::Snappy))
}

#[cfg(feature = "io_avro_compression")]
#[test]
fn deflate() -> Result<()> {
roundtrip(Some(write::Compression::Deflate))
Expand Down