use_containers -> use_container

latchbio · Jan 19, 2024 · 27c7f16 · 27c7f16
1 parent 0aa484a
commit 27c7f16
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/latch/types/metadata.py b/latch/types/metadata.py
@@ -543,7 +543,7 @@ class EnvironmentConfig:
     """
     Use Snakemake `conda` directive to spawn tasks in conda environments
     """
-    use_containers: bool = True
+    use_container: bool = True
     """
     Use Snakemake `container` directive to spawn tasks in Docker containers
     """

diff --git a/latch_cli/snakemake/workflow.py b/latch_cli/snakemake/workflow.py
@@ -672,9 +672,9 @@ def __init__(
             metadata._snakemake_metadata.env_config is not None
             and metadata._snakemake_metadata.env_config.use_conda
         )
-        self._use_containers = (
+        self._use_container = (
             metadata._snakemake_metadata.env_config is not None
-            and metadata._snakemake_metadata.env_config.use_containers
+            and metadata._snakemake_metadata.env_config.use_container
         )
         self.snakemake_tasks: List[SnakemakeJobTask] = []
 
@@ -1329,7 +1329,7 @@ def get_fn_code(
             "-s",
             snakefile_path_in_container,
             *(["--use-conda"] if self.wf._use_conda else []),
-            *(["--use-singularity"] if self.wf._use_containers else []),
+            *(["--use-singularity"] if self.wf._use_container else []),
             "--target-jobs",
             *jobs_cli_args(jobs),
             "--allowed-rules",