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libscran

C++ libraries for single-cell analysis
README.md

C++ libraries for single-cell analysis

This organization contains bits and pieces of C++ code for single-cell analysis. Most of this was originally taken from the scran R package, with some refactoring to enable re-use outside of R.

Developers can check out the scran-cli repository to see how the various libscran components fit together. For actual analyses, users are referred to the R, Python or Javascript bindings.

Popular repositories Loading

  1. umappp umappp Public

    C++ port of the UMAP algorithm

    C++ 46 15

  2. qdtsne qdtsne Public

    Quick-and-dirty t-SNE in C++

    C++ 9 2

  3. scran.chan scran.chan Public

    A slimmed down version of scran, based on the C++ library of the same name.

    R 9

  4. libscran libscran Public archive

    scran, but in C++.

    C++ 7

  5. mnncorrect mnncorrect Public

    C++ implementation of the MNN correction algorithm

    C++ 4

  6. scran-cli scran-cli Public

    A command line interface to scran

    C++ 3

Repositories

Showing 10 of 24 repositories
  • scrapper Public

    R bindings to C++ code for single-cell analysis

    libscran/scrapper’s past year of commit activity
    R 3 0 0 0 Updated Dec 24, 2024
  • scran_graph_cluster Public

    Graph-based clustering for single-cell data

    libscran/scran_graph_cluster’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Dec 23, 2024
  • scran_pca Public

    Various flavors of principal components analysis

    libscran/scran_pca’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Dec 21, 2024
  • scran_variances Public

    Model per-gene variances in log-expression data

    libscran/scran_variances’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Dec 21, 2024
  • clrm1 Public

    A slightly improved method for ADT normalization

    libscran/clrm1’s past year of commit activity
    R 0 MIT 0 0 0 Updated Dec 20, 2024
  • scran_norm Public

    Normalize and log-transform count matrices

    libscran/scran_norm’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Dec 20, 2024
  • qdtsne Public

    Quick-and-dirty t-SNE in C++

    libscran/qdtsne’s past year of commit activity
    C++ 9 MIT 2 1 0 Updated Nov 22, 2024
  • umappp Public

    C++ port of the UMAP algorithm

    libscran/umappp’s past year of commit activity
    C++ 46 BSD-2-Clause 15 5 0 Updated Nov 20, 2024
  • scran_tests Public

    Test utilities for libscran

    libscran/scran_tests’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Nov 19, 2024
  • scran_markers Public

    Marker detection from single-cell expression data

    libscran/scran_markers’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Nov 17, 2024
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