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Improve data export with the CLI by making a single command to run ve…
…rsus the current 6 step process. `./life-export` will configure defaults, ask the user to authenticate, and pull data locally as JSON under a directory named `life-data`.
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| Original file line number | Diff line number | Diff line change |
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@@ -16,6 +16,7 @@ pids | |
| .idea | ||
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| build/ | ||
| life-data/ | ||
| work/ | ||
| target/ | ||
| .git/ | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,74 @@ | ||
| #!/usr/bin/env node | ||
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| const _get = require('lodash/get'); | ||
| const chalk = require('chalk'); | ||
| const execa = require('execa'); | ||
| const fs = require('fs'); | ||
| const mkdirp = require('mkdirp'); | ||
| const os = require('os'); | ||
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| const DATA_DIR = 'life-data'; | ||
| const LIFE_PROJECT = 'f82a69fb-3f0c-4405-9b7f-8df05aaec159'; | ||
| const LO = os.platform() === 'win32' ? 'lo.exe' : './lo'; | ||
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| (async () => { | ||
| await mkdirp(DATA_DIR); | ||
| console.log(chalk.green('LIFE data will be exported into directory named:'), chalk.bold(DATA_DIR)); | ||
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| console.log(chalk.green('Configuring with defaults...')); | ||
| const defaults = execa(LO, [ | ||
| 'setup', | ||
| '--environment', | ||
| 'prod-us', | ||
| '--account', | ||
| 'lifeomiclife', | ||
| '--clientId', | ||
| '2qt93qphnctjbs9ftdpjhvgkl1' | ||
| ]); | ||
| defaults.stdout.pipe(process.stdout); | ||
| await defaults; | ||
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| console.log(chalk.green('Authenticating...')); | ||
| const auth = execa(LO, ['auth']); | ||
| auth.stdout.pipe(process.stdout); | ||
| await auth; | ||
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| console.log(chalk.green('Fetching FHIR me...')); | ||
| const me = execa(LO, [ | ||
| 'fhir', | ||
| 'me', | ||
| '--json', | ||
| '--account', | ||
| 'lifeomiclife' | ||
| ]); | ||
| // eslint-disable-next-line security/detect-non-literal-fs-filename | ||
| me.stdout.pipe(fs.createWriteStream(`${DATA_DIR}/me.json`)); | ||
| const { stdout: meStdout } = await me; | ||
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| const meId = _get(JSON.parse(meStdout), 'entry[0].resource.id'); | ||
| console.log(chalk.green('User Identifier:'), chalk.bold(meId)); | ||
| console.log(chalk.green(`Me exported: ✅`)); | ||
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| const FHIR_TYPES = ['Procedure', 'Observation', 'Goal']; | ||
| for (const type of FHIR_TYPES) { | ||
| console.log(chalk.green(`Fetching ${type}...`)); | ||
| const subprocess = execa(LO, [ | ||
| 'fhir', | ||
| 'list', | ||
| type, | ||
| '--project', | ||
| LIFE_PROJECT, | ||
| `--query`, | ||
| `subject=${meId}`, | ||
| '--json', | ||
| '--account', | ||
| 'lifeomiclife' | ||
| ]); | ||
| // eslint-disable-next-line security/detect-non-literal-fs-filename | ||
| subprocess.stdout.pipe(fs.createWriteStream(`${DATA_DIR}/${type}.json`)); | ||
| await subprocess; | ||
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| console.log(chalk.green(`${type} exported: ✅`)); | ||
| } | ||
| console.log(chalk.green('LIFE data export complete.')); | ||
| })(); |
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