MAINT: Update Github Action workflow files

.github/workflows/build_doc.yml

@@ -24,12 +24,9 @@ jobs:
         run: |
           pip install --upgrade pip
           pip install -e .
-
-      - name: install openneuro-py
-        run: pip install openneuro-py
-
-      - name: install pytorch
-        run: pip install torch
+
+      - name: Install testing dependencies
+        run: pip install -r requirements_testing.txt
 
       - name: Install doc dependencies
         run: pip install -r docs/requirements_doc.txt

.github/workflows/check_linting.yml

@@ -15,7 +15,7 @@ jobs:
         run: pip install -r requirements_testing.txt
       # Run Ruff
       - name: Run Ruff
-        run: ruff pylossless
+        run: ruff check pylossless
       # Run Codespell
       - name: Run Codespell
         run: codespell pylossless

.github/workflows/main_pylossless-qc-demo.yml

@@ -0,0 +1,63 @@
+# Docs for the Azure Web Apps Deploy action: https://github.com/Azure/webapps-deploy
+# More GitHub Actions for Azure: https://github.com/Azure/actions
+# More info on Python, GitHub Actions, and Azure App Service: https://aka.ms/python-webapps-actions
+
+name: Build and deploy Python app to Azure Web App - pylossless-qc-demo
+
+on:
+  push:
+    branches:
+      - main
+  workflow_dispatch:
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - name: Set up Python version
+        uses: actions/setup-python@v1
+        with:
+          python-version: '3.7'
+
+      - name: Create and start virtual environment
+        run: |
+          python -m venv venv
+          source venv/bin/activate
+
+      - name: Install dependencies
+        run: pip install -r requirements.txt
+
+      # Optional: Add step to run tests here (PyTest, Django test suites, etc.)
+
+      - name: Upload artifact for deployment jobs
+        uses: actions/upload-artifact@v2
+        with:
+          name: python-app
+          path: |
+            . 
+            !venv/
+
+  deploy:
+    runs-on: ubuntu-latest
+    needs: build
+    environment:
+      name: 'Production'
+      url: ${{ steps.deploy-to-webapp.outputs.webapp-url }}
+
+    steps:
+      - name: Download artifact from build job
+        uses: actions/download-artifact@v2
+        with:
+          name: python-app
+          path: .
+
+      - name: 'Deploy to Azure Web App'
+        uses: azure/webapps-deploy@v2
+        id: deploy-to-webapp
+        with:
+          app-name: 'pylossless-qc-demo'
+          slot-name: 'Production'
+          publish-profile: ${{ secrets.AZUREAPPSERVICE_PUBLISHPROFILE_B1F7B3988A884792AC90F3E962E01A2B }}

.github/workflows/test_pipeline.yml

@@ -23,10 +23,6 @@ jobs:
         run: pip install -r requirements_testing.txt
       - name: Install QC depedencies
         run: pip install -r requirements_qc.txt
-      - name: install openneuro
-        run: pip install openneuro-py
-      - name: install pytorch
-        run: pip install torch
       - name: Test Pipeline
         run: |
           coverage run -m pytest

docs/requirements_doc.txt

@@ -1,4 +1,3 @@
-openneuro-py
 sphinx>=6
 shibuya
 sphinx-design

requirements.txt

@@ -1,5 +1,4 @@
 numpy>=1.21.2
-EDFlib-Python
 mne>=1.5
 mne_bids>=0.14
 pandas

requirements_testing.txt

@@ -9,4 +9,6 @@ pydocstyle
 ruff
 selenium
 tomli; python_version<'3.11'
-torch
+torch
+edfio
+openneuro-py