updated ci tools

.github/workflows/test-and-lint.yml

@@ -12,7 +12,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ["3.8", "3.9", "3.10"]
+        python-version: ["3.8", "3.9", "3.10", "3.11"]
 
     steps:
     - uses: actions/checkout@v2

hpc_helper/_hpc_helper.py

@@ -4,9 +4,8 @@
 import subprocess
 import sys
 import warnings
-from collections.abc import Sequence
 from pathlib import Path
-from typing import Literal, Optional, get_args
+from typing import Literal, Optional, Sequence, get_args
 
 from hpc_helper._types import path_t
 

pyproject.toml

@@ -58,6 +58,6 @@ lint = { cmd = "ruff hpc_helper --fix", help = "Lint all files with ruff." }
 _lint_ci = "ruff hpc_helper --output-format=github"
 _check_format = "ruff format . --check"
 ci_check = { sequence = ["_check_format", "_lint_ci"], help = "Check all potential format and linting issues." }
-test = {cmd = "pytest --cov=hpc-helper --cov-report=xml", help = "Run Pytest with coverage." }
+test = {cmd = "pytest --cov=hpc_helper --cov-report=xml", help = "Run Pytest with coverage." }
 update_version = {"script" = "_tasks:task_update_version"}
 default = {sequence = ["format", "lint", "test"], help = "Run the default pipeline, consisting of formatting, linting, and testing."}

.ruff.toml → ruff.toml

@@ -1,5 +1,5 @@
 line-length = 120
-target-version = "py39"
+target-version = "py38"
 
 select = [
     # pyflakes
@@ -57,18 +57,12 @@ select = [
     "TRY",
     # flake8-use-pathlib
     "PTH",
-    "RUF",
-    # Numpy rules
-    "NPY",
-    # Implicit namespace packages
-    "INP",
-    # No relative imports
-    "TID252",
-    # f-strings over string concatenation
-    "FLY",
+    "RUF"
 ]
 
 ignore = [
+    # No explicit stacklevel keyword argument found in logging calls
+    "B028",
     # controversial
     "B006",
     # controversial
@@ -80,22 +74,25 @@ ignore = [
     "EM101",
     "EM102",
     "EM103",
-    # Exception strings
-    "TRY003",
+    # Multiline docstring summary
+    "D213",
     # Varaibles before return
     "RET504",
     # Abstract raise into inner function
     "TRY301",
+    # Avoid specifying long messages outside the exception class
+    "TRY003",
+    # Use type-checking block
+    "TCH001",
+    "TCH002",
+    "TCH003",
+    # .pivot_table is preferred to .pivot or .unstack; provides same functionality
+    "PD010",
     # df as varaible name
     "PD901",
     # melt over stack
     "PD013",
-    # No Any annotations
-    "ANN401",
-    # To many arguments
-    "PLR0913",
-    # Ignore because of formatting
-    "ISC001",
+    "ISC001" # Implicit string concatenation
 ]
 
 
@@ -105,8 +102,11 @@ exclude = [
     "doc/temp/*.py",
     ".eggs/*.py",
     "example_data",
+    "examples"
 ]
 
+[pylint]
+max-args = 15
 
 [pydocstyle]
 convention = "numpy"