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tune.splsda take multilevel and add exampel #137

tune.splsda take multilevel and add exampel

tune.splsda take multilevel and add exampel #137

Triggered via push November 28, 2024 01:28
Status Failure
Total duration 9m 15s
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R-CMD-check.yml

on: push
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Matrix: R-CMD-check
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9 errors and 17 warnings
macOS-latest (r_4.4 - bioc_3.20 - image_)
--- re-building ‘vignette.Rmd’ using rmarkdown
macOS-latest (r_4.4 - bioc_3.20 - image_)
processing vignette 'vignette.Rmd' failed with diagnostics:
macOS-latest (r_4.4 - bioc_3.20 - image_)
Vignette re-building failed.
macOS-latest (r_4.4 - bioc_3.20 - image_)
Process completed with exit code 1.
macOS-latest (r_4.4 - bioc_3.20 - image_)
No such keg: /opt/homebrew/Cellar/[email protected]
windows-latest (r_4.4 - bioc_3.20 - image_)
processing vignette 'vignette.Rmd' failed with diagnostics:
windows-latest (r_4.4 - bioc_3.20 - image_)
Vignette re-building failed.
windows-latest (r_4.4 - bioc_3.20 - image_)
Process completed with exit code 1.
ubuntu-latest (r_4.4 - bioc_3.20 - image_bioconductor/bioconductor_docker:3.20)
Process completed with exit code 1.
macOS-latest (r_4.4 - bioc_3.20 - image_)
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v1. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/
ubuntu-latest (r_4.4 - bioc_3.20 - image_bioconductor/bioconductor_docker:3.20)
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v1. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/
windows-latest (r_4.4 - bioc_3.20 - image_)
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v1. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/
macOS-latest (r_4.4 - bioc_3.20 - image_)
'rgl.init' failed, running with 'rgl.useNULL = TRUE'.
macOS-latest (r_4.4 - bioc_3.20 - image_)
pkgconf 2.3.0_1 is already installed and up-to-date. To reinstall 2.3.0_1, run: brew reinstall pkgconf
macOS-latest (r_4.4 - bioc_3.20 - image_)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!
macOS-latest (r_4.4 - bioc_3.20 - image_)
Unexpected input(s) 'extra-repositories', valid inputs are ['cache', 'cache-version', 'extra-packages', 'needs', 'packages', 'pak-version', 'working-directory', 'dependencies', 'upgrade', 'lockfile-create-lib', 'install-pandoc', 'pandoc-version', 'install-quarto', 'quarto-version']
macOS-latest (r_4.4 - bioc_3.20 - image_)
Unexpected input(s) 'extra-repositories', valid inputs are ['cache', 'cache-version', 'extra-packages', 'needs', 'packages', 'pak-version', 'working-directory', 'dependencies', 'upgrade', 'lockfile-create-lib', 'install-pandoc', 'pandoc-version', 'install-quarto', 'quarto-version']
macOS-latest (r_4.4 - bioc_3.20 - image_)
macOS's Gatekeeper has been disabled for this Cask
macOS-latest (r_4.4 - bioc_3.20 - image_)
gcc 14.2.0_1 is already installed and up-to-date. To reinstall 14.2.0_1, run: brew reinstall gcc
macOS-latest (r_4.4 - bioc_3.20 - image_)
No files were found with the provided path: check. No artifacts will be uploaded.
windows-latest (r_4.4 - bioc_3.20 - image_)
Unexpected input(s) 'extra-repositories', valid inputs are ['cache', 'cache-version', 'extra-packages', 'needs', 'packages', 'pak-version', 'working-directory', 'dependencies', 'upgrade', 'lockfile-create-lib', 'install-pandoc', 'pandoc-version', 'install-quarto', 'quarto-version']
windows-latest (r_4.4 - bioc_3.20 - image_)
Unexpected input(s) 'extra-repositories', valid inputs are ['cache', 'cache-version', 'extra-packages', 'needs', 'packages', 'pak-version', 'working-directory', 'dependencies', 'upgrade', 'lockfile-create-lib', 'install-pandoc', 'pandoc-version', 'install-quarto', 'quarto-version']
windows-latest (r_4.4 - bioc_3.20 - image_)
No files were found with the provided path: check. No artifacts will be uploaded.
ubuntu-latest (r_4.4 - bioc_3.20 - image_bioconductor/bioconductor_docker:3.20)
Unexpected input(s) 'extra-repositories', valid inputs are ['cache', 'cache-version', 'extra-packages', 'needs', 'packages', 'pak-version', 'working-directory', 'dependencies', 'upgrade', 'lockfile-create-lib', 'install-pandoc', 'pandoc-version', 'install-quarto', 'quarto-version']
ubuntu-latest (r_4.4 - bioc_3.20 - image_bioconductor/bioconductor_docker:3.20)
No files were found with the provided path: check. No artifacts will be uploaded.
ubuntu-latest (r_4.4 - bioc_3.20 - image_bioconductor/bioconductor_docker:3.20)
Unexpected input(s) 'extra-repositories', valid inputs are ['cache', 'cache-version', 'extra-packages', 'needs', 'packages', 'pak-version', 'working-directory', 'dependencies', 'upgrade', 'lockfile-create-lib', 'install-pandoc', 'pandoc-version', 'install-quarto', 'quarto-version']