REL: v0.13

.github/workflows/unit_tests.yml

@@ -100,11 +100,11 @@ jobs:
       run: |
         python -m pip install .[full]
         python -c 'import mne_bids; print(mne_bids.__version__)'
-        python -c 'import pybv; print(pybv.__version__)'
         python -c 'import nibabel; print(nibabel.__version__)'
+        python -c 'import pybv; print(pybv.__version__)'
+        python -c 'import pymatreader; print(pymatreader.__version__)'
         python -c 'import matplotlib; print(matplotlib.__version__)'
         python -c 'import pandas; print(pandas.__version__)'
-        python -c 'import pymatreader; print(pymatreader.__version__)'
         python -c 'import EDFlib; print("EDFlib has no .__version__")'
 
   test:
@@ -171,13 +171,13 @@ jobs:
     - name: Install MNE (stable)
       if: "matrix.mne-version == 'mne-stable'"
       run: |
-        git clone --single-branch --branch maint/1.4 https://github.com/mne-tools/mne-python.git
+        git clone --single-branch --branch maint/1.5 https://github.com/mne-tools/mne-python.git
         python -m pip install -e ./mne-python
 
     - name: Install MNE (previous stable)
       if: "matrix.mne-version == 'mne-prev-stable'"
       run: |
-        git clone --single-branch --branch maint/1.3 https://github.com/mne-tools/mne-python.git
+        git clone --single-branch --branch maint/1.4 https://github.com/mne-tools/mne-python.git
         python -m pip install -e ./mne-python
 
     - name: Install MNE (main)

doc/_static/versions.json

@@ -1,13 +1,18 @@
 [
     {
-        "name": "0.13 (devel)",
+        "name": "0.14 (devel)",
         "version": "dev",
         "url": "https://mne.tools/mne-bids/dev/"
     },
     {
-        "name": "0.12 (stable)",
+        "name": "0.13 (stable)",
+        "version": "dev",
+        "url": "https://mne.tools/mne-bids/v0.13/"
+    },
+    {
+        "name": "0.12",
         "version": "stable",
-        "url": "https://mne.tools/mne-bids/stable/"
+        "url": "https://mne.tools/mne-bids/v0.12/"
     },
     {
         "name": "0.11",

doc/install.rst

@@ -12,7 +12,7 @@ Dependencies
 
 Required:
 
-* ``mne`` (>=1.3)
+* ``mne`` (>=1.4)
 * ``numpy`` (>=1.20.2)
 * ``scipy`` (>=1.6.3)
 
@@ -25,9 +25,11 @@ Optional:
 * ``pandas`` (>=1.2.4, for generating event statistics)
 * ``EDFlib-Python`` (>=1.0.6, for writing EDF data)
 
-We recommend the `Anaconda <https://www.anaconda.com/download/>`_ Python distribution.
+We recommend installing ``mne-bids`` into an isolated Python environment,
+for example created via ``conda``
+(may be obtained through `miniconda <https://docs.conda.io/en/latest/miniconda.html>`_).
 We require that you **use Python 3.8 or higher**.
-You may choose to install ``mne-bids``
+You may choose to install ``mne-bids`` into your isolated Python environment
 `via pip <#installation-via-pip>`_ or
 `via conda <#installation-via-conda>`_.
 
@@ -42,10 +44,10 @@ simply run:
    pip install --upgrade mne-bids[full]
 
 This ``pip`` command will also work if you want to upgrade if a newer version
-of ``mne-bids`` is available.
+of MNE-BIDS is available.
 
 If you don't require advanced features like interactive visual data inspection,
-you may also install a basic version of ``mne-bids`` via
+you may also install a basic version of MNE-BIDS via
 
 .. code-block:: bash
 
@@ -55,7 +57,7 @@ If you want to install a snapshot of the current development version, run:
 
 .. code-block:: bash
 
-   pip install --upgrade https://api.github.com/repos/mne-tools/mne-bids/zipball/main
+   pip install --upgrade git+https://github.com/mne-tools/mne-bids
 
 To check if everything worked fine, the following command should
 print a version number and not give any error messages:
@@ -68,14 +70,13 @@ MNE-BIDS works best with the latest stable release of MNE-Python (the ``mne`` pa
 To ensure MNE-Python is up-to-date, follow the
 `MNE-Python installation instructions <https://mne.tools/stable/install/#>`_.
 
-
 Installation via conda
 ----------------------
 
 If you have followed the
 `MNE-Python installation instructions <https://mne.tools/stable/install/#>`_,
-all that's left to do is to install ``mne-bids`` without its dependencies, as
-they've already been installed during the MNE-Python installation process.
+all that's left to do is to install MNE-BIDS without its dependencies,
+as they've already been installed during the MNE-Python installation process.
 
 Activate the correct ``conda`` environment and install ``mne-bids``:
 
@@ -84,7 +85,7 @@ Activate the correct ``conda`` environment and install ``mne-bids``:
    conda activate mne
    conda install --channel conda-forge --no-deps mne-bids
 
-This approach ensures that the installation of ``mne-bids`` doesn't alter any
+This approach ensures that the installation of MNE-BIDS doesn't alter any
 other packages in your existing ``conda`` environment.
 
 Alternatively, you may wish to take advantage of the fact that the
@@ -97,7 +98,7 @@ dependencies) will provide you with a working copy of of both ``mne`` and
 
    conda create --name mne --channel conda-forge mne-bids
 
-After activating the environment, you should be ready to use ``mne-bids``:
+After activating the environment, you should be ready to use MNE-BIDS:
 
 .. code-block:: bash
 

doc/requirements.txt

@@ -9,3 +9,4 @@ pillow
 pandas
 mne-nirs
 seaborn
+openneuro-py

doc/whats_new.rst

@@ -9,32 +9,26 @@ What's new?
 
 .. _changes_0_13:
 
-Version 0.13 (unreleased)
+Version 0.13 (2023-08-xx)
 -------------------------
 
-...
-
-📝 Notable changes
-~~~~~~~~~~~~~~~~~~
-
-- ...
-
 👩🏽‍💻 Authors
 ~~~~~~~~~~~~~~~
 
 The following authors contributed for the first time. Thank you so much! 🤩
 
-* `Laetitia Fesselier`_
-* `Jonathan Vanhoecke`_
 * `Ford McDonald`_
+* `Jonathan Vanhoecke`_
+* `Laetitia Fesselier`_
 * `Pierre Guetschel`_
 
 The following authors had contributed before. Thank you for sticking around! 🤘
 
-* `Richard Höchenberger`_
+* `Adam Li`_
+* `Alexandre Gramfort`_
 * `Eric Larson`_
+* `Richard Höchenberger`_
 * `Stefan Appelhoff`_
-* `Adam Li`_
 
 Detailed list of changes
 ~~~~~~~~~~~~~~~~~~~~~~~~
@@ -55,7 +49,7 @@ Detailed list of changes
 🛠 Requirements
 ^^^^^^^^^^^^^^^
 
-- MNE-BIDS now requires MNE-Python 1.3 or newer.
+- MNE-BIDS now requires MNE-Python 1.4 or newer.
 
 🪲 Bug fixes
 ^^^^^^^^^^^^

mne_bids/__init__.py

@@ -1,6 +1,6 @@
 """MNE software for easily interacting with BIDS compatible datasets."""
 
-__version__ = "0.13.dev0"
+__version__ = "0.13"
 from mne_bids import commands
 from mne_bids.report import make_report
 from mne_bids.path import (

setup.cfg

@@ -34,7 +34,7 @@ project_urls =
 [options]
 python_requires = ~= 3.8
 install_requires =
-  mne >= 1.3
+  mne >= 1.4
   numpy >= 1.20.2
   scipy >= 1.6.3
 packages = find:
@@ -44,10 +44,10 @@ include_package_data = True
 full =
   nibabel >= 3.2.1
   pybv >= 0.7.5
+  pymatreader >= 0.0.30
   matplotlib >= 3.4.0
   pandas >= 1.2.4
   EDFlib-Python >= 1.0.6
-  pymatreader >= 0.0.30
 
 [options.entry_points]
 console_scripts =

test_requirements.txt

@@ -1,13 +1,12 @@
+mne>=1.4
 numpy>=1.20.2
 scipy>=1.6.3
-mne>=1.3
-matplotlib>=3.4.0
-pandas>=1.2.4
 nibabel>=3.2.1
 pybv>=0.7.5
-openneuro-py>=2022.2
-EDFlib-Python>=1.0.6
 pymatreader>=0.0.30
+matplotlib>=3.4.0
+pandas>=1.2.4
+EDFlib-Python>=1.0.6
 pytest
 pytest-cov
 pytest-sugar