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Nextstrain

Real-time tracking of pathogen evolution

168 followers
https://nextstrain.org
@nextstrain
@[email protected]

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ncov ncov Public

Nextstrain build for novel coronavirus SARS-CoV-2

Python 1.4k 403
augur augur Public

Pipeline components for real-time phylodynamic analysis

Python 268 128
auspice auspice Public

Web app for visualizing pathogen evolution

JavaScript 292 162

Repositories

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Showing 10 of 92 repositories

nextclade_data Public
Datasets for https://github.com/nextstrain/nextclade

nextstrain/nextclade_data’s past year of commit activity

Python 32 28 8 13 Updated Nov 27, 2024
yellow-fever Public

nextstrain/yellow-fever’s past year of commit activity

Python 0 4 2 0 Updated Nov 27, 2024
docs.nextstrain.org Public
Umbrella documentation project for Nextstrain

nextstrain/docs.nextstrain.org’s past year of commit activity

Python 18 13 22 6 Updated Nov 26, 2024
mpox Public
Nextstrain build for mpox virus

nextstrain/mpox’s past year of commit activity

Python 45 MIT 19 26 8 Updated Nov 26, 2024
.github Public

nextstrain/.github’s past year of commit activity

Shell 8 11 8 1 Updated Nov 26, 2024
zika Public
Nextstrain build for Zika virus

nextstrain/zika’s past year of commit activity

Python 8 11 3 0 Updated Nov 26, 2024
whitepaper Public
White paper describing Nextstrain

nextstrain/whitepaper’s past year of commit activity

TeX 0 3 0 0 Updated Nov 26, 2024
infra Public
Nextstrain shared infrastructure

nextstrain/infra’s past year of commit activity

Makefile 0 0 2 0 Updated Nov 26, 2024
human-metapneumovirus Public
Human metapneumovirus pathogen build

nextstrain/human-metapneumovirus’s past year of commit activity

Python 0 0 0 0 Updated Nov 26, 2024
pathogen-repo-guide Public template

nextstrain/pathogen-repo-guide’s past year of commit activity

Python 4 1 18 0 Updated Nov 26, 2024

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Python JavaScript Shell C TypeScript

Most used topics

nextstrain pathogen sars-cov-2 clades ncov

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