Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Hadoop 2 and AWS EMR 5 compatibility #15

Open
wants to merge 3 commits into
base: master
Choose a base branch
from
Open

Hadoop 2 and AWS EMR 5 compatibility #15

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
48e6152
Hadoop 2 compatibility.
Jan 2, 2017
1965868
Adding profile for AWS EMR.
Jan 2, 2017
cfde7ef
Adding note about AWS EMR.
Jan 2, 2017
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 2 additions & 0 deletions .gitignore
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -10,3 +10,5 @@ bin
*.iml
run.sh
workspace
dependency-reduced-pom.xml

6 changes: 4 additions & 2 deletions README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -13,9 +13,9 @@ Some preliminary results are available in this blog post:

## Building from source

Install maven (tested with 2.2.1) and java jdk 6, then:
Install maven (tested with 3.3.9) and java jdk >= 6, then:

$ mvn assembly:assembly
$ mvn package

This should download the dependencies, build a jar in the target/
subfolder and run the tests.
Expand All @@ -36,6 +36,8 @@ comprehensive documentation on where to download the dumps from and how
to setup a Hadoop cluster on EC2 using [Apache Whirr](
http://incubator.apache.org/whirr).

It is compatible with AWS EMR 5.2.1.

### Extracting links from a raw Wikipedia XML dump

You can take example on the extract-links.pig example script:
Expand Down
290 changes: 159 additions & 131 deletions pom.xml
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,134 +1,162 @@
<?xml version="1.0" encoding="UTF-8"?>
<project
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"
xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<modelVersion>4.0.0</modelVersion>
<groupId>pignlproc</groupId>
<artifactId>pignlproc</artifactId>
<version>0.1.0-SNAPSHOT</version>
<name>pignlproc</name>
<description>pig tools and script to process wikipedia and dbpedia for NLP</description>
<dependencies>
<dependency>
<groupId>org.apache.pig</groupId>
<artifactId>pig</artifactId>
<version>0.8.1</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.apache.hadoop</groupId>
<artifactId>hadoop-core</artifactId>
<version>0.20.2</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>stax</groupId>
<artifactId>stax</artifactId>
<version>1.2.0</version>
</dependency>
<dependency>
<groupId>info.bliki.wiki</groupId>
<artifactId>bliki-core</artifactId>
<version>3.0.16</version>
</dependency>
<dependency>
<groupId>commons-lang</groupId>
<artifactId>commons-lang</artifactId>
<version>2.4</version>
</dependency>
<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<version>2.0.1</version>
</dependency>
<dependency>
<groupId>org.apache.opennlp</groupId>
<artifactId>opennlp-tools</artifactId>
<version>1.5.1-incubating</version>
</dependency>
<dependency>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-core</artifactId>
<version>3.0.3</version>
</dependency>
<dependency>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-analyzers</artifactId>
<version>3.0.3</version>
</dependency>
<dependency>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
<version>1.2.13</version>
<exclusions>
<exclusion>
<artifactId>mail</artifactId>
<groupId>javax.mail</groupId>
</exclusion>
<exclusion>
<artifactId>jms</artifactId>
<groupId>javax.jms</groupId>
</exclusion>
<exclusion>
<artifactId>jmxtools</artifactId>
<groupId>com.sun.jdmk</groupId>
</exclusion>
<exclusion>
<artifactId>jmxri</artifactId>
<groupId>com.sun.jmx</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.2</version>
<scope>test</scope>
</dependency>
</dependencies>

<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<configuration>
<source>1.6</source>
<target>1.6</target>
</configuration>
</plugin>
<plugin>
<artifactId>maven-assembly-plugin</artifactId>
<version>2.2-beta-5</version>
<configuration>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
<appendAssemblyId>false</appendAssemblyId>
<!--
<archive>
<manifest>
<mainClass>pignlproc.cli.CLI</mainClass>
</manifest>
</archive>
-->
</configuration>
</plugin>
</plugins>
</build>

<repositories>
<repository>
<id>info-bliki-repository</id>
<url>http://gwtwiki.googlecode.com/svn/maven-repository/</url>
<releases>
<enabled>true</enabled>
</releases>
<snapshots>
<enabled>false</enabled>
</snapshots>
</repository>
</repositories>

xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"
xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<modelVersion>4.0.0</modelVersion>
<groupId>pignlproc</groupId>
<artifactId>pignlproc</artifactId>
<version>0.2.0-SNAPSHOT</version>
<name>pignlproc</name>
<description>pig tools and script to process wikipedia and dbpedia for NLP</description>
<properties>
<pig.scope>compile</pig.scope>
<hadoop.version>2.7.3</hadoop.version>
</properties>
<profiles>
<profile>
<id>awsemr</id>
<activation>
<property>
<name>awsemr</name>
</property>
</activation>
<properties>
<pig.scope>provided</pig.scope>
</properties>
</profile>
</profiles>
<dependencies>
<dependency>
<groupId>org.apache.pig</groupId>
<artifactId>pig</artifactId>
<version>0.16.0</version>
<classifier>h2</classifier>
<scope>${pig.scope}</scope>
</dependency>
<dependency>
<groupId>org.apache.hadoop</groupId>
<artifactId>hadoop-common</artifactId>
<version>${hadoop.version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.apache.hadoop</groupId>
<artifactId>hadoop-mapreduce-client-core</artifactId>
<version>${hadoop.version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.apache.hadoop</groupId>
<artifactId>hadoop-mapreduce-client-common</artifactId>
<version>${hadoop.version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.apache.hadoop</groupId>
<artifactId>hadoop-hdfs</artifactId>
<version>${hadoop.version}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>stax</groupId>
<artifactId>stax</artifactId>
<version>1.2.0</version>
</dependency>
<dependency>
<groupId>info.bliki.wiki</groupId>
<artifactId>bliki-core</artifactId>
<version>3.0.19</version>
</dependency>
<dependency>
<groupId>commons-lang</groupId>
<artifactId>commons-lang</artifactId>
<version>2.4</version>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>20.0</version>
</dependency>
<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<version>2.5</version>
</dependency>
<dependency>
<groupId>org.apache.opennlp</groupId>
<artifactId>opennlp-tools</artifactId>
<version>1.6.0</version>
</dependency>
<dependency>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-core</artifactId>
<version>3.6.0</version>
</dependency>
<dependency>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-analyzers</artifactId>
<version>3.6.0</version>
</dependency>
<dependency>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
<version>1.2.13</version>
<exclusions>
<exclusion>
<artifactId>mail</artifactId>
<groupId>javax.mail</groupId>
</exclusion>
<exclusion>
<artifactId>jms</artifactId>
<groupId>javax.jms</groupId>
</exclusion>
<exclusion>
<artifactId>jmxtools</artifactId>
<groupId>com.sun.jdmk</groupId>
</exclusion>
<exclusion>
<artifactId>jmxri</artifactId>
<groupId>com.sun.jmx</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.12</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.dbpedia.spotlight</groupId>
<version>0.7</version>
<artifactId>core</artifactId>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.1</version>
<configuration>
<source>1.8</source>
<target>1.8</target>
<encoding>UTF-8</encoding>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-shade-plugin</artifactId>
<version>2.4.3</version>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>shade</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
</project>

4 changes: 0 additions & 4 deletions src/main/java/pignlproc/storage/UriStringLiteralNTriplesStorer.java
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -37,10 +37,6 @@ public UriStringLiteralNTriplesStorer(String propertyUri, String subjectNamespac

@Override
public void putNext(Tuple fields) throws IOException {
if (fields.isNull()) {
// skip null entries
return;
}
if (fields.size() != 2) {
throw new ExecException("Expected 2 chararray fields in input tuple: subject and object");
}
Expand Down
4 changes: 0 additions & 4 deletions src/main/java/pignlproc/storage/UriUriNTriplesStorer.java
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -37,10 +37,6 @@ public UriUriNTriplesStorer(String propertyUri, String subjectNamespace, String

@Override
public void putNext(Tuple fields) throws IOException {
if (fields.isNull()) {
// skip null entries
return;
}
if (fields.size() != 2) {
throw new ExecException("Expected 2 chararray fields in input tuple: subject and object");
}
Expand Down