omnibenchmark workflow

Powered by Snakemake

How to

make install to install dependencies
make activate to activate the environment with the dependencies (pipenv shell)
make benchmark to run the benchmark (= trigger the Snakefile)
make dry to dry run the benchmark (= dry run the Snakefile)
make clean deletes the ./out and ./log output folders

Parse a YAML specification of a benchmark and dynamically build snakemake rules to build the suitable workflow.

Develop in branch dev, seldom merged to main

05 Feb 2024, Izaskun Mallona

Name		Name	Last commit message	Last commit date
Latest commit History 81 Commits
data		data
src		src
.gitignore		.gitignore
LICENSE		LICENSE
Makefile		Makefile
Pipfile		Pipfile
README.md		README.md
main.py		main.py