Expected v1.0 #282

sergpolly · 2021-10-23T04:22:49Z

make cooltools comply with expected v1.0 Standard for expected v1.0 #217 (saddle, dots, logbin_expected, TODO snipping)
introduce read_expected and read_view wrappers in .lib.common, a bit messy now, but improve cli readability
update tests to comply with expected v1.0 and some refactoring (saddle), expected in expected.diagsum_from_array , bad bin inference breaks down for small arrays #276

tests/test_expected.py

tests/test_compartments_saddle.py

cooltools/lib/common.py

cooltools/expected.py

cooltools/snipping.py

cooltools/cli/call_dots.py

cooltools/cli/compute_saddle.py

cooltools/lib/common.py

cooltools/saddle.py

cooltools/snipping.py

cooltools/lib/common.py

sergpolly added 6 commits October 22, 2021 22:37

diagsum_from_array test update based on #276

66e96de

update tests data to conform expected format v1.0

de8afa9

introduce lib.common.read_expected and read_viewframe wrappers

2a8707d

make saddle and dotfined comply expected v1.0

bc4efac

make use read_expected and view wrappers in cli, comply expected v1.0

00bfb6e

fixup compartment-saddles testing

d870647

sergpolly commented Oct 23, 2021

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make snipping comply expected format v1.0

0c1d32f

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bumpup pandas requirements, adjust related code

d6ae76d