add workflow_run #169
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| name: Update website content | |
| on: | |
| push: | |
| branches: | |
| - 'main' | |
| - 'test_website' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: read | |
| jobs: | |
| update_content: | |
| runs-on: ubuntu-latest | |
| env: | |
| UPDATE_BRANCH_NAME: "auto_update_content_${{ github.run_number }}" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| path: openproblems | |
| - name: Checkout website repo | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 1 | |
| repository: openproblems-bio/website | |
| ref: main | |
| path: website | |
| token: ${{ secrets.GH_ACTIONS_WEBSITE_PAT }} | |
| - name: Set up website Git branch | |
| working-directory: website | |
| run: | | |
| git checkout -b $UPDATE_BRANCH_NAME | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.8" | |
| - name: Install package & dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -U wheel setuptools | |
| pip install -U --editable ./openproblems[process] | |
| python -c "import openproblems" | |
| - name: Parse metadata | |
| run: | | |
| python openproblems/workflow/parse_metadata.py website/results | |
| cp openproblems/main.bib website/bibliography/library.bib | |
| cd website | |
| git diff --exit-code --quiet || echo "CHANGED=true" >> $GITHUB_ENV | |
| - name: Upload json | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: json | |
| path: website/content/benchmarks | |
| - name: Push to openproblems-bio/website | |
| if: | | |
| env.CHANGED == 'true' && | |
| ( | |
| startsWith(github.ref, 'refs/heads/main') || | |
| endsWith(github.event.head_commit.message, '# publish') | |
| ) | |
| shell: bash | |
| working-directory: './website' | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GH_ACTIONS_WEBSITE_PAT }} | |
| run: | | |
| git push origin "${UPDATE_BRANCH_NAME}" | |
| - name: Create website Pull Request | |
| if: | | |
| env.CHANGED == 'true' && | |
| ( | |
| startsWith(github.ref, 'refs/heads/main') || | |
| endsWith(github.event.head_commit.message, '# publish') | |
| ) | |
| uses: peter-evans/create-pull-request@v4 | |
| with: | |
| base: main | |
| branch: ${{ env.UPDATE_BRANCH_NAME }} | |
| delete-branch: true | |
| title: '[auto] Update benchmark content' | |
| reviewers: scottgigante-immunai,rcannood | |
| path: './website' | |
| token: ${{ secrets.GH_ACTIONS_WEBSITE_PAT }} | |
| author: "openproblems-bio <[email protected]>" | |
| commit-message: "Update benchmark content # ci skip" |