fix action #170
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Update website content | |
| on: | |
| push: | |
| branches: | |
| - 'main' | |
| - 'test_website' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: read | |
| jobs: | |
| update_content: | |
| runs-on: ubuntu-latest | |
| env: | |
| UPDATE_BRANCH_NAME: "auto_update_content_${{ github.run_number }}" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| path: openproblems | |
| - name: Checkout website repo | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 1 | |
| repository: openproblems-bio/website | |
| ref: main | |
| path: website | |
| token: ${{ secrets.GH_ACTIONS_WEBSITE_PAT }} | |
| - name: Set up website Git branch | |
| working-directory: website | |
| run: | | |
| git checkout -b $UPDATE_BRANCH_NAME | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.8" | |
| - name: Install package & dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -U wheel setuptools | |
| pip install -U --editable ./openproblems[process] | |
| python -c "import openproblems" | |
| - name: Parse metadata | |
| run: | | |
| python openproblems/workflow/parse_metadata.py website/results | |
| cp openproblems/main.bib website/bibliography/library.bib | |
| cd website | |
| git diff --exit-code --quiet || echo "CHANGED=true" >> $GITHUB_ENV | |
| - name: Upload json | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: json | |
| path: website/content/benchmarks | |
| - name: Push to openproblems-bio/website | |
| if: | | |
| env.CHANGED == 'true' && | |
| ( | |
| startsWith(github.ref, 'refs/heads/main') || | |
| endsWith(github.event.head_commit.message, '# publish') | |
| ) | |
| shell: bash | |
| working-directory: './website' | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GH_ACTIONS_WEBSITE_PAT }} | |
| run: | | |
| git push origin "${UPDATE_BRANCH_NAME}" | |
| - name: Create website Pull Request | |
| if: | | |
| env.CHANGED == 'true' && | |
| ( | |
| startsWith(github.ref, 'refs/heads/main') || | |
| endsWith(github.event.head_commit.message, '# publish') | |
| ) | |
| uses: peter-evans/create-pull-request@v4 | |
| with: | |
| base: main | |
| branch: ${{ env.UPDATE_BRANCH_NAME }} | |
| delete-branch: true | |
| title: '[auto] Update benchmark content' | |
| reviewers: scottgigante-immunai,rcannood | |
| path: './website' | |
| token: ${{ secrets.GH_ACTIONS_WEBSITE_PAT }} | |
| author: "openproblems-bio <[email protected]>" | |
| commit-message: "Update benchmark content # ci skip" |