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@Bonelab Bone Imaging Laboratory

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    22 repositories

    • bonelab-website

      Public
      Source code for the Bone Imaging Laboratory website.
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated Jan 20, 2025Jan 20, 2025

    • Ogo

      Public
      Ogo - A library of tools for opportunistic CT, including internal calibration, segmentation, image manipulation and quantitative analysis.
      internalcalibrationtomographycomputedctinternalcalibration
      Python
      •
      GNU General Public License v3.0
      •1•4•1•0•Updated Jan 17, 2025Jan 17, 2025

    • bonelab.github.io

      Public
      PHP
      •
      GNU General Public License v3.0
      •0•1•1•0•Updated Nov 26, 2024Nov 26, 2024

    • HRpQCT-Knee-Seg

      Public
      this repo contains an installable package for doing automated HR-pQCT knee segmentation
      Python
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Aug 13, 2024Aug 13, 2024

    • BML-MRI-segmentation

      Public
      Python
      •0•0•0•0•Updated Aug 6, 2024Aug 6, 2024

    • HR-pQCT-Segmentation

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•6•0•0•Updated Jul 29, 2024Jul 29, 2024

    • Bonelab

      Public
      Collection of utility software from the Bone Imaging Laboratory
      Python
      •
      GNU General Public License v3.0
      •2•4•4•0•Updated Jul 21, 2024Jul 21, 2024

    • hrpqct-knee-segmentation

      Public
      Scripts for training and testing models with the goal of automating knee contouring. Depends on `bonelab-pytorch-lightning`
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 22, 2024May 22, 2024

    • bonelab-pytorch-lightning

      Public
      Tasks, dataset components, loss functions, and utilities for using pytorch lightning for deep learning with medical image data.
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 2, 2024May 2, 2024

    • uct-parameter-interdependence

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Apr 19, 2024Apr 19, 2024

    • hr-pqct-image-processing-server

      Public
      Python
      •0•1•0•0•Updated Jan 23, 2024Jan 23, 2024

    • tutorial_dl_segmentation

      Public
      A tutorial for deep learning-based segmentation with PyTorch, PyTorch-Lightning, and the internal bonelab-pytorch-lightning package.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 12, 2023Jun 12, 2023

    • DECT_BoneAnalysis

      Public
      Functions for dual-energy CT (DECT) based analyses of bone/marrow
      Python
      •1•4•0•0•Updated Feb 18, 2022Feb 18, 2022

    • InternalCalibration_GUI

      Public
      Updated ogo_IC to include user interface & link to ITK-SNAP
      Python
      •0•0•0•0•Updated Sep 28, 2021Sep 28, 2021

    • ITKMorphometry

      Public
      C++
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 19, 2021Aug 19, 2021

    • FemurSegmentation

      Public
      Femur segmentation using bone enhancement filtering and multi label graph cuts
      C++
      •4•9•1•0•Updated May 12, 2021May 12, 2021

    • Sphere-Motion

      Public
      Closed Form Solution to a Sphere under Advection and Mean Curvature Flow
      TeX
      •0•0•0•0•Updated Jan 5, 2021Jan 5, 2021

    • Ogo-Data

      Public
      Data used for testing and demonstrating Ogo
      0•0•0•0•Updated Mar 25, 2020Mar 25, 2020

    • BonelabData

      Public
      A repository of example data used for testing and development
      1•2•0•0•Updated Mar 2, 2020Mar 2, 2020

    • Bone_Adaptation_as_Level_Set_Motion

      Public
      Code accommodating the MICCAI-MSKI conference proceeding.
      C++
      •1•1•3•0•Updated Jul 27, 2018Jul 27, 2018

    • bone-segmentation

      Public
      Source code behind the paper Fully automatic and fast segmentation of the femur bone
      C++
      •25•1•0•0•Updated Aug 1, 2017Aug 1, 2017

    • FemurSegmentation-MSKI2017

      Public
      Associated scripts for the femur segmentation conference proceeding in the MSKI subconference of MICCAI 2017
      Python
      •2•1•1•0•Updated Jul 11, 2017Jul 11, 2017