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@ComputationalPhysiology Computational Physiology at Simula Research Laboratory

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    54 repositories

    • cardiac-geometries

      Public
      Tool for creating idealised cardiac geometries and microstructure
      geometrymeshcardiac
      Python
      •
      MIT License
      •3•6•0•1•Updated Nov 25, 2024Nov 25, 2024

    • cardiac-geometriesx

      Public
      Cardiac-geometries for dolfinx
      Python
      •
      MIT License
      •0•4•0•1•Updated Nov 25, 2024Nov 25, 2024

    • simcardems

      Public
      Simula Cardiac ElectroMechanics Solver
      Python
      •
      GNU Lesser General Public License v2.1
      •11•11•8•6•Updated Nov 25, 2024Nov 25, 2024

    • mps

      Public
      Tools for working with mps files
      image-analysismpscardiacorgan-on-chipheart-on-chip
      Python
      •
      GNU Lesser General Public License v2.1
      •0•1•0•1•Updated Nov 25, 2024Nov 25, 2024

    • mps_motion

      Public
      Library for tracking motion in cardiac mps data
      Python
      •
      MIT License
      •0•1•0•1•Updated Nov 25, 2024Nov 25, 2024

    • cardiac-geometries-core

      Public
      Python
      •
      MIT License
      •0•0•0•1•Updated Nov 25, 2024Nov 25, 2024

    • ap_features

      Public
      Package to compute features of traces from action potential models
      Python
      •
      GNU Lesser General Public License v2.1
      •3•7•3•1•Updated Nov 25, 2024Nov 25, 2024

    • simcardems2

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 25, 2024Nov 25, 2024

    • constrained_mixture_models

      Public
      Software and documentation for exploring homogenized constrained mixture models for cardiac growth and remodeling
      TeX
      •
      MIT License
      •0•0•0•0•Updated Nov 11, 2024Nov 11, 2024

    • modelgraph

      Public
      A tool for visualizing dependencies between different components of your model
      Python
      •
      MIT License
      •0•2•0•0•Updated Nov 9, 2024Nov 9, 2024

    • circulation

      Public
      Cardiac Circulation Models
      Python
      •
      MIT License
      •0•1•0•1•Updated Nov 7, 2024Nov 7, 2024

    • oasisx

      Public
      Next generation Open Source Navier Stokes solver using FEniCSx
      Python
      •
      MIT License
      •1•6•1•0•Updated Nov 3, 2024Nov 3, 2024

    • 0D-mechanics-simulator

      Public
      Simple 0D mechanics simulator
      Python
      •
      MIT License
      •0•1•0•0•Updated Nov 3, 2024Nov 3, 2024

    • automatic-motion-estimation

      Public
      Source code for reproducing results in the paper "Automatic motion estimation with applications to hiPSC-CMs"
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

    • ukb-atlas

      Public
      Generate meshes from UK Biobank atlas
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

    • gotran

      Public
      Library for declaring and translating ODEs
      Python
      •
      GNU Lesser General Public License v3.0
      •1•2•3•1•Updated Jul 1, 2024Jul 1, 2024

    • goss

      Public
      General ODE System Solver
      cppodeode-solverodeintpython
      C++
      •
      GNU Lesser General Public License v3.0
      •0•2•0•1•Updated Jun 24, 2024Jun 24, 2024

    • simula-lights

      Public
      Tool controlling the lights at KA23
      Python
      •1•0•0•0•Updated Mar 26, 2024Mar 26, 2024

    • ciucci-2024

      Public
      Source code for reproducing results of ciucci-2024 paper
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 26, 2024Feb 26, 2024

    • simula-tools-meetup

      Public
      researchtoolssoftware
      Jupyter Notebook
      •
      The Unlicense
      •6•0•0•0•Updated Nov 20, 2023Nov 20, 2023

    • pseudo-ecg

      Public
      Library to compute pseudo ECG from bidomain and monodomain simulations
      Python
      •
      MIT License
      •0•3•0•0•Updated Sep 25, 2023Sep 25, 2023

    • cbcbeat

      Public
      An adjoint-enabled framework for computational cardiac electrophysiology
      Python
      •
      GNU Lesser General Public License v3.0
      •0•6•4•1•Updated Sep 24, 2023Sep 24, 2023

    • odesolver

      Public
      General suite of ODE solvers
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 19, 2023Sep 19, 2023

    • mps-database-dashapp

      Public
      Python
      •0•0•0•0•Updated Aug 30, 2023Aug 30, 2023

    • mps_data_parser

      Public
      Tool for parsing information from filenames
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 25, 2023Aug 25, 2023

    • docker_workflows

      Public
      A simple guide on how to use docker in your development workflow
      Jupyter Notebook
      •
      MIT License
      •2•1•0•0•Updated Jun 30, 2023Jun 30, 2023

    • SSCP_2023_project6

      Public
      Model codes and demos for Simula summer school 2023 project 6
      Python
      •0•0•0•0•Updated Jun 29, 2023Jun 29, 2023

    • tissue-detection

      Public
      Library for detecting tissue
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 23, 2023Jun 23, 2023

    • computationalphysiology.github.io

      Public
      Home page https://computationalphysiology.github.io
      MIT License
      •0•1•0•0•Updated Jun 6, 2023Jun 6, 2023

    • pulse

      Public archive
      A software for solving problems in cardiac mechanics using FEniCS
      Python
      •
      GNU Lesser General Public License v3.0
      •2•2•1•0•Updated Jun 6, 2023Jun 6, 2023