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    8 repositories

    • Wakhan

      Public
      Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data
      Python
      •
      MIT License
      •0•30•1•0•Updated Nov 15, 2024Nov 15, 2024

    • longread_somatic_nf

      Public
      Nextflow
      •0•2•1•0•Updated Nov 8, 2024Nov 8, 2024

    • Severus

      Public
      A tool for somatic structural variant calling using long reads
      Python
      •
      Other
      •5•105•13•0•Updated Nov 7, 2024Nov 7, 2024

    • strainy

      Public
      Graph-based assembly phasing
      Python
      •
      Other
      •5•1•0•0•Updated Oct 31, 2024Oct 31, 2024

    • minda

      Public
      Python
      •
      Other
      •3•14•1•0•Updated Jun 25, 2024Jun 25, 2024

    • hapdup

      Public
      Pipeline to convert a haploid assembly into diploid
      Python
      •
      Other
      •10•93•5•0•Updated May 21, 2024May 21, 2024

    • hapcorrect

      Public
      Haplotypes phase-switching errors correction in long reads
      Python
      •
      MIT License
      •0•5•0•0•Updated May 6, 2024May 6, 2024

    • hapdiff

      Public
      SV calling for diploid assemblies
      Python
      •
      MIT License
      •3•23•2•0•Updated Mar 22, 2024Mar 22, 2024