Repositories list

• SenescenceGenomicArchitecture

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jun 4, 2024Jun 4, 2024

• SenGuiDe

  Public
  Software to generate figures in the SenGuiDe manuscript

  MIT License

  •0•0•0•0•Updated Nov 17, 2023Nov 17, 2023

• RepEnrich2

  Public
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.

  Python

  •9•36•6•1•Updated Feb 14, 2022Feb 14, 2022

• scRNA_seq

  Public
  Utilities scripts for the analysis of single cell transcriptomics

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Jun 2, 2021Jun 2, 2021

• Intro_ML_AI

  Public
  Introduction to Machine Learning and Artificial Intelligence

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Mar 9, 2021Mar 9, 2021

• SIMBA3D

  Public
  Structure Inference (from) Multiscale BAyes in 3D

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •3•2•0•0•Updated Sep 4, 2020Sep 4, 2020

• WPSCalc

  Public
  Calculates Window-Protection Score from aligned sequencing data over a given Chromosome & interval

  Python

  •0•0•0•0•Updated Jun 18, 2019Jun 18, 2019

• GenArch

  Public
  GenArch software for whole genome 3D reconstruction

  MATLAB

  •0•0•0•0•Updated Feb 1, 2018Feb 1, 2018

• GINOM

  Public
  GINOM is a statistical framework for assessing interval overlap of multiple genomic features.

  MATLAB

  •

  MIT License

  •2•4•0•0•Updated Dec 18, 2017Dec 18, 2017

• FISH_MDS

  Public
  A Julia package that models 3D structures from Hi-C contact matrices

  Julia

  •

  Other

  •0•0•0•0•Updated Jan 26, 2017Jan 26, 2017

• 3DC-Browser

  Public
  A visualization and annotation tool for 3D structures of chromosomes

  JavaScript

  •0•2•0•0•Updated Jan 26, 2017Jan 26, 2017