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    37 repositories

    • MegaQC

      Public
      Web application to collect and visualise data across multiple MultiQC runs.
      Python
      •
      GNU General Public License v3.0
      •27•0•0•13•Updated Jan 23, 2023Jan 23, 2023

    • igv.js

      Public
      Embeddable genomic visualization component based on the Integrative Genomics Viewer
      JavaScript
      •
      MIT License
      •231•0•0•0•Updated Mar 8, 2022Mar 8, 2022

    • PyVCF

      Public
      A Variant Call Format reader for Python.
      Python
      •
      Other
      •223•0•0•0•Updated Sep 21, 2021Sep 21, 2021

    • MultiQC

      Public
      Aggregate results from bioinformatics analyses across many samples into a single report.
      Python
      •
      GNU General Public License v3.0
      •612•0•0•0•Updated Mar 2, 2021Mar 2, 2021

    • vcfiterator

      Public
      Python module for iterating over a VCF file, parsing and generating data structures.
      Python
      •
      MIT License
      •4•0•0•1•Updated Dec 15, 2020Dec 15, 2020

    • patientMatcher

      Public
      A MatchMaker Exchange server
      Python
      •
      MIT License
      •6•0•0•0•Updated Oct 23, 2020Oct 23, 2020

    • loqusdb

      Public
      A simple observation count database
      Python
      •
      MIT License
      •8•0•0•0•Updated Oct 8, 2019Oct 8, 2019

    • azure-templates

      Public
      Shell
      •
      MIT License
      •0•0•0•0•Updated Jul 30, 2019Jul 30, 2019

    • azure-quickstart-templates

      Public
      Azure Quickstart Templates
      PowerShell
      •
      MIT License
      •16k•0•0•0•Updated Jul 19, 2019Jul 19, 2019

    • beacon

      Public
      GA4GH Beacon implementation
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 13, 2018Dec 13, 2018

    • MultiQC_TestData

      Public
      Test data for MultiQC. See https://github.com/ewels/MultiQC
      HTML
      •
      MIT License
      •145•0•0•0•Updated Oct 8, 2018Oct 8, 2018

    • genologics

      Public
      Python interface to the GenoLogics LIMS server via its REST API.
      Python
      •
      MIT License
      •53•0•0•0•Updated Oct 3, 2018Oct 3, 2018

    • reference-server

      Public
      A simple Flask server that implements the Matchmaker Exchange API
      Python
      •
      MIT License
      •8•0•0•0•Updated Sep 27, 2018Sep 27, 2018

    • genologics_sql

      Public
      Python interface for the Genologics Postgres database.
      Python
      •
      MIT License
      •9•0•0•0•Updated Jul 20, 2018Jul 20, 2018

    • vcfanno

      Public
      annotate a VCF with other VCFs/BEDs/tabixed files
      Go
      •
      MIT License
      •56•0•0•0•Updated Dec 7, 2016Dec 7, 2016

    • bix

      Public
      tabix file access with golang using biogo machinery
      Go
      •
      MIT License
      •15•0•0•0•Updated Dec 7, 2016Dec 7, 2016

    • irelate

      Public
      Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang
      Go
      •
      MIT License
      •10•0•0•0•Updated Dec 6, 2016Dec 6, 2016

    • hts

      Public
      biogo high throughput sequencing repository
      Go
      •
      BSD 3-Clause "New" or "Revised" License
      •41•0•0•0•Updated Dec 3, 2016Dec 3, 2016

    • vcfgo

      Public
      a golang library to read, write and manipulate files in the variant call format.
      Go
      •
      MIT License
      •19•0•0•0•Updated Nov 24, 2016Nov 24, 2016

    • gopher-lua

      Public
      GopherLua: VM and compiler for Lua in Go
      Go
      •
      MIT License
      •665•0•0•0•Updated Nov 24, 2016Nov 24, 2016

    • vep

      Public
      Perl
      •0•1•0•0•Updated Oct 26, 2016Oct 26, 2016

    • perl-dbi

      Public
      Perl
      •0•0•0•0•Updated Oct 24, 2016Oct 24, 2016

    • lita-slack

      Public
      A Slack adapter for Lita.
      Ruby
      •
      MIT License
      •130•0•0•0•Updated Oct 11, 2016Oct 11, 2016

    • xopen

      Public
      open files for buffered reading and writing in #golang
      Go
      •
      MIT License
      •8•0•0•0•Updated Sep 29, 2016Sep 29, 2016

    • toml

      Public
      TOML parser for Golang with reflection.
      Go
      •
      Do What The F*ck You Want To Public License
      •530•0•0•0•Updated Aug 19, 2016Aug 19, 2016

    • goluaez

      Public
      ez embedding lua in go
      Go
      •
      MIT License
      •1•0•0•0•Updated Jan 16, 2016Jan 16, 2016

    • htslib

      Public
      C library for high-throughput sequencing data formats
      C
      •
      Other
      •443•0•0•0•Updated Oct 12, 2015Oct 12, 2015

    • picard

      Public
      A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.
      Java
      •372•0•0•0•Updated Oct 12, 2015Oct 12, 2015

    • nextflow

      Public
      A DSL for data-driven computational pipelines
      Groovy
      •
      GNU General Public License v3.0
      •664•0•0•0•Updated Oct 11, 2015Oct 11, 2015

    • samtools

      Public
      Tools (written in C using htslib) for manipulating next-generation sequencing data
      C
      •
      Other
      •583•0•0•0•Updated Oct 9, 2015Oct 9, 2015