Code

extend sleuth to model TPMs#145

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pimentel merged 9 commits intopachterlab:develpachterlab/sleuth:develfrom warrenmcg:alrwarrenmcg/sleuth:alrCopy head branch name to clipboardMar 12, 2018

+150-84

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Commits on Nov 1, 2017

• add option for a separate transformation function for TPM values

  warrenmcg

  committed
  2a2e1e1

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• add code to process TPMs in a similar way to estimated counts when processing bootstraps, and set up TPM values for use in sleuth fit

  warrenmcg

  committed
  af3e627

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• update documentation and NAMESPACE for TPM changes

  warrenmcg

  committed
  8194508

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• tweak behavior of gene mode summarizing in 'process_bootstrap' to only modify 'bs_quants' if 'extra_sbootstrap_summary' is TRUE

  warrenmcg

  committed
  2edff23

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• enhance 'sleuth_fit' to be able to model TPM values in addition to the default estimated counts:

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  warrenmcg

  committed
  cfd65d8

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• modify print function for 'sleuth_model' to print out 'which_var' and 'transform_sync' status

  warrenmcg

  committed
  f866398

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Commits on Nov 8, 2017

• allow max_bootstrap option to affect how many bootstraps are processed

  warrenmcg

  committed
  fb3ecdc

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Commits on Nov 17, 2017

• improve plot_ma to display correct units depending on which_var of the selected model

  warrenmcg

  committed
  5d09823

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Commits on Mar 12, 2018

• Merge branch 'devel' into alr

  pimentel

  authored
  9a552ff

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