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feat(models): use sparse arrays for posterior samples #612

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Aug 14, 2024
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2 changes: 1 addition & 1 deletion MODULE.bazel
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ pyrovelocity MODULE

module(
name = "pyrovelocity",
version = "0.3.0b4",
version = "0.3.0b5",
compatibility_level = 1,
)

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9,266 changes: 4,726 additions & 4,540 deletions MODULE.bazel.lock

Large diffs are not rendered by default.

4 changes: 2 additions & 2 deletions Makefile
Original file line number Diff line number Diff line change
Expand Up @@ -913,8 +913,8 @@ approve-prs: ## Approve github pull requests from bots: PR_ENTRIES="2-5 10 12-18
fi; \
done

PREVIOUS_VERSION := 0.3.0b3
NEXT_VERSION := 0.3.0b4
PREVIOUS_VERSION := 0.3.0b4
NEXT_VERSION := 0.3.0b5
VERSION_FILES := \
pyproject.toml \
conda/colab/construct.yaml \
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55 changes: 28 additions & 27 deletions conda/colab/construct.yaml
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
name: pyrovelocity-colab
version: 0.3.0b4
version: 0.3.0b5

channels:
- pytorch
Expand All @@ -22,12 +22,12 @@ specs:
- adal=1.2.7=pyhd8ed1ab_0
- adjusttext=1.2.0=pyhd8ed1ab_0
- adlfs=2024.7.0=pyhd8ed1ab_0
- aiobotocore=2.13.1=pyhd8ed1ab_0
- aiobotocore=2.13.2=pyhd8ed1ab_0
- aiohttp=3.9.5=py311h459d7ec_0
- aioitertools=0.11.0=pyhd8ed1ab_0
- aiosignal=1.3.1=pyhd8ed1ab_0
- alembic=1.13.2=pyhd8ed1ab_0
- altair=5.3.0=pyhd8ed1ab_0
- altair=5.4.0=pyhd8ed1ab_0
- aniso8601=9.0.1=pyhd8ed1ab_0
- anndata=0.10.8=pyhd8ed1ab_0
- annotated-types=0.7.0=pyhd8ed1ab_0
Expand Down Expand Up @@ -86,7 +86,7 @@ specs:
- brotli-bin=1.1.0=hd590300_1
- brotli-python=1.1.0=py311hb755f60_1
- bzip2=1.0.8=h4bc722e_7
- c-ares=1.32.3=h4bc722e_0
- c-ares=1.33.0=ha66036c_0
- ca-certificates=2024.7.4=hbcca054_0
- cachecontrol=0.14.0=pyhd8ed1ab_1
- cachecontrol-with-filecache=0.14.0=pyhd8ed1ab_1
Expand Down Expand Up @@ -165,14 +165,14 @@ specs:
- exceptiongroup=1.2.2=pyhd8ed1ab_0
- executing=2.0.1=pyhd8ed1ab_0
- expat=2.6.2=h59595ed_0
- expression=5.0.2=pyhd8ed1ab_0
- expression=5.1.0=pyhd8ed1ab_0
- fastapi=0.112.0=pyhd8ed1ab_0
- fastapi-cli=0.0.5=pyhd8ed1ab_0
- filelock=3.15.4=pyhd8ed1ab_0
- flask=3.0.3=pyhd8ed1ab_0
- flax=0.8.5=pyhd8ed1ab_0
- flyteidl=1.13.0=pyhd8ed1ab_0
- flytekit=1.13.0=pyhd8ed1ab_0
- flyteidl=1.13.1=pyhd8ed1ab_0
- flytekit=1.13.3=pyhd8ed1ab_0
- fmt=10.2.1=h00ab1b0_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
Expand All @@ -191,8 +191,8 @@ specs:
- gcsfs=2024.6.1=pyhd8ed1ab_0
- gdk-pixbuf=2.42.12=hb9ae30d_0
- get-annotations=0.1.2=pyhd8ed1ab_0
- gettext=0.22.5=h59595ed_2
- gettext-tools=0.22.5=h59595ed_2
- gettext=0.22.5=he02047a_3
- gettext-tools=0.22.5=he02047a_3
- gflags=2.2.2=he1b5a44_1004
- gitdb=4.0.11=pyhd8ed1ab_0
- gitpython=3.1.43=pyhd8ed1ab_0
Expand All @@ -206,9 +206,9 @@ specs:
- google-auth-httplib2=0.2.0=pyhd8ed1ab_0
- google-auth-oauthlib=1.2.1=pyhd8ed1ab_0
- google-cloud-core=2.4.1=pyhd8ed1ab_0
- google-cloud-storage=2.18.1=pyhff2d567_0
- google-cloud-storage=2.18.2=pyhff2d567_0
- google-crc32c=1.1.2=py311h9b08b9c_5
- google-resumable-media=2.7.0=pyhd8ed1ab_0
- google-resumable-media=2.7.2=pyhd8ed1ab_1
- googleapis-common-protos=1.63.2=pyhd8ed1ab_0
- graphene=3.3=pyhd8ed1ab_0
- graphite2=1.3.13=h59595ed_1003
Expand Down Expand Up @@ -237,7 +237,7 @@ specs:
- hydra-core=1.3.2=pyhd8ed1ab_0
- hydra-zen=0.13.0=pyhd8ed1ab_0
- hyperframe=6.0.1=pyhd8ed1ab_0
- hypothesis=6.110.1=pyha770c72_0
- hypothesis=6.111.0=pyha770c72_0
- ibis-framework=9.3.0=hd8ed1ab_0
- ibis-framework-core=9.3.0=pyhd8ed1ab_0
- icu=75.1=he02047a_0
Expand Down Expand Up @@ -290,8 +290,8 @@ specs:
- libarrow-flight-sql=15.0.2=h61825be_19_cpu
- libarrow-gandiva=15.0.2=hfcb4b9d_19_cpu
- libarrow-substrait=15.0.2=h61825be_19_cpu
- libasprintf=0.22.5=h661eb56_2
- libasprintf-devel=0.22.5=h661eb56_2
- libasprintf=0.22.5=he8f35ee_3
- libasprintf-devel=0.22.5=he8f35ee_3
- libavif16=1.1.1=h9b56c87_0
- libblas=3.9.0=16_linux64_mkl
- libbrotlicommon=1.1.0=hd590300_1
Expand All @@ -316,12 +316,12 @@ specs:
- libgcc-ng=14.1.0=h77fa898_0
- libgcrypt=1.11.0=h4ab18f5_1
- libgd=2.3.3=hd3e95f3_10
- libgettextpo=0.22.5=h59595ed_2
- libgettextpo-devel=0.22.5=h59595ed_2
- libgettextpo=0.22.5=he02047a_3
- libgettextpo-devel=0.22.5=he02047a_3
- libgfortran-ng=14.1.0=h69a702a_0
- libgfortran5=14.1.0=hc5f4f2c_0
- libgirepository=1.80.1=h003a4f0_0
- libglib=2.80.3=h8a4344b_1
- libglib=2.80.3=h315aac3_2
- libgomp=14.1.0=h77fa898_0
- libgoogle-cloud=2.26.0=h26d7fe4_0
- libgoogle-cloud-storage=2.26.0=ha262f82_0
Expand Down Expand Up @@ -401,6 +401,7 @@ specs:
- multipledispatch=0.6.0=pyhd8ed1ab_1
- munkres=1.1.4=pyh9f0ad1d_0
- mypy_extensions=1.0.0=pyha770c72_0
- narwhals=1.4.0=pyhd8ed1ab_0
- natsort=8.4.0=pyhd8ed1ab_0
- nbclient=0.10.0=pyhd8ed1ab_0
- nbconvert=7.16.4=hd8ed1ab_1
Expand All @@ -418,7 +419,7 @@ specs:
- oauthlib=3.2.2=pyhd8ed1ab_0
- omegaconf=2.3.0=pyhd8ed1ab_0
- openjpeg=2.5.2=h488ebb8_0
- openpyxl=3.1.4=py311h459d7ec_0
- openpyxl=3.1.5=py311h459d7ec_0
- openssl=3.3.1=h4bc722e_2
- opentelemetry-api=1.16.0=pyhd8ed1ab_0
- opentelemetry-sdk=1.16.0=pyhd8ed1ab_0
Expand All @@ -430,19 +431,19 @@ specs:
- orbax-checkpoint=0.4.4=pyhd8ed1ab_0
- orc=2.0.1=h17fec99_1
- ordered-set=4.1.0=pyhd8ed1ab_0
- orjson=3.10.6=py311hb3a8bbb_0
- orjson=3.10.7=py311hb3a8bbb_0
- outcome=1.3.0.post0=pyhd8ed1ab_0
- packaging=24.1=pyhd8ed1ab_0
- pandas=2.2.2=py311h14de704_1
- pandoc=3.3=ha770c72_0
- pandocfilters=1.5.0=pyhd8ed1ab_0
- pango=1.54.0=h4c5309f_1
- papermill=2.6.0=pyhd8ed1ab_0
- paramiko=3.4.0=pyhd8ed1ab_0
- paramiko=3.4.1=pyhd8ed1ab_0
- parso=0.8.4=pyhd8ed1ab_0
- parsy=2.1=pyhd8ed1ab_0
- patsy=0.5.6=pyhd8ed1ab_0
- pcre2=10.44=h0f59acf_0
- pcre2=10.44=hba22ea6_2
- pexpect=4.9.0=pyhd8ed1ab_0
- pickleshare=0.7.5=py_1003
- pillow=10.4.0=py311h82a398c_0
Expand Down Expand Up @@ -521,12 +522,12 @@ specs:
- pyyaml=6.0.2=py311h61187de_0
- pyzmq=26.1.0=py311h759c1eb_0
- qhull=2020.2=h434a139_5
- querystring_parser=1.2.4=py_0
- querystring_parser=1.2.4=pyhd8ed1ab_1
- rapidfuzz=3.9.6=py311hf86e51f_0
- rav1e=0.6.6=he8a937b_2
- rdma-core=53.0=he02047a_0
- re2=2023.09.01=h7f4b329_2
- readchar=4.1.0=pyhd8ed1ab_0
- readchar=4.2.0=pyhd8ed1ab_0
- readline=8.2=h8228510_1
- referencing=0.35.1=pyhd8ed1ab_0
- regex=2024.7.24=py311h61187de_0
Expand Down Expand Up @@ -570,9 +571,9 @@ specs:
- statsd=4.0.1=pyh1a96a4e_0
- statsmodels=0.14.2=py311h18e1886_0
- stdlib-list=0.10.0=pyhd8ed1ab_0
- stringcase=1.2.0=py_0
- stringcase=1.2.0=pyhd8ed1ab_1
- svt-av1=2.1.2=hac33072_0
- sympy=1.13.0=pypyh2585a3b_103
- sympy=1.13.2=pypyh2585a3b_103
- sysroot_linux-64=2.17=h4a8ded7_16
- tbb=2021.12.0=h434a139_3
- tenacity=9.0.0=pyhd8ed1ab_0
Expand All @@ -586,7 +587,7 @@ specs:
- tk=8.6.13=noxft_h4845f30_101
- toml=0.10.2=pyhd8ed1ab_0
- tomli=2.0.1=pyhd8ed1ab_0
- tomlkit=0.13.0=pyha770c72_0
- tomlkit=0.13.2=pyha770c72_0
- toolz=0.12.1=pyhd8ed1ab_0
- torchmetrics=1.4.0.post0=pyhd8ed1ab_0
- torchtriton=3.0.0=py311
Expand Down Expand Up @@ -645,7 +646,7 @@ specs:
- yaml=0.2.5=h7f98852_2
- yarl=1.9.4=py311h459d7ec_0
- zeromq=4.3.5=h75354e8_4
- zipp=3.19.2=pyhd8ed1ab_0
- zipp=3.20.0=pyhd8ed1ab_0
- zlib=1.3.1=h4ab18f5_1
- zstandard=0.23.0=py311h5cd10c7_0
- zstd=1.5.6=ha6fb4c9_0
Expand Down
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