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@@ -20,3 +20,4 @@ revdep/ | |
README.Rmd | ||
abbvie.R | ||
^\.httr-oauth$ | ||
^\.github$ |
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*.html |
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# NOTE: This workflow is overkill for most R packages | ||
# check-standard.yaml is likely a better choice | ||
# usethis::use_github_action("check-standard") will install it. | ||
# | ||
# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | ||
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | ||
on: | ||
push: | ||
branches: | ||
- main | ||
- master | ||
pull_request: | ||
branches: | ||
- main | ||
- master | ||
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name: R-CMD-check | ||
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jobs: | ||
R-CMD-check: | ||
runs-on: ${{ matrix.config.os }} | ||
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name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | ||
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strategy: | ||
fail-fast: false | ||
matrix: | ||
config: | ||
- {os: macOS-latest, r: 'release'} | ||
- {os: windows-latest, r: 'release'} | ||
- {os: windows-latest, r: '3.6', rspm: "https://packagemanager.rstudio.com/cran/latest"} | ||
- {os: ubuntu-18.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest", http-user-agent: "R/4.1.0 (ubuntu-18.04) R (4.1.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" } | ||
# vdiffr & shinytest only runs on linux r-release since the results aren't cross-platform | ||
- {os: ubuntu-18.04, r: 'release', vdiffr: true, shinytest: true, rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | ||
- {os: ubuntu-18.04, r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | ||
- {os: ubuntu-18.04, r: '3.6', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | ||
- {os: ubuntu-18.04, r: '3.5', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | ||
- {os: ubuntu-18.04, r: '3.4', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | ||
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env: | ||
RSPM: ${{ matrix.config.rspm }} | ||
VDIFFR: ${{ matrix.config.vdiffr }} | ||
SHINYTEST: ${{ matrix.config.shinytest }} | ||
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
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steps: | ||
- uses: actions/checkout@v2 | ||
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- uses: r-lib/actions/setup-r@v1 | ||
id: install-r | ||
with: | ||
r-version: ${{ matrix.config.r }} | ||
http-user-agent: ${{ matrix.config.http-user-agent }} | ||
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- uses: r-lib/actions/setup-pandoc@v1 | ||
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- name: Install pak and query dependencies | ||
run: | | ||
install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/") | ||
saveRDS(pak::pkg_deps("local::.", dependencies = TRUE), ".github/r-depends.rds") | ||
shell: Rscript {0} | ||
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- name: Restore R package cache | ||
uses: actions/cache@v2 | ||
with: | ||
path: | | ||
${{ env.R_LIBS_USER }}/* | ||
!${{ env.R_LIBS_USER }}/pak | ||
key: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-1-${{ hashFiles('.github/r-depends.rds') }} | ||
restore-keys: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-1- | ||
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- name: Install system dependencies | ||
if: runner.os == 'Linux' | ||
run: | | ||
pak::local_system_requirements(execute = TRUE) | ||
pak::pkg_system_requirements("rcmdcheck", execute = TRUE) | ||
shell: Rscript {0} | ||
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#- name: Install google chrome | ||
# if: matrix.config.vdiffr == true | ||
# shell: bash | ||
# run: | | ||
# wget -q -O - https://dl-ssl.google.com/linux/linux_signing_key.pub | apt-key add - | ||
# sh -c 'echo "deb [arch=amd64] http://dl.google.com/linux/chrome/deb/ stable main" >> /etc/apt/sources.list.d/google-chrome.list' | ||
# apt-get update -y | ||
# apt-get install -y google-chrome-stable | ||
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# TODO: maybe this should install via conda or npm instead? | ||
- name: Install orca | ||
if: matrix.config.vdiffr == true | ||
shell: bash | ||
run: | | ||
sudo apt-get -y update | ||
sudo apt-get install -y libgtk2.0-0 libgconf-2-4 xvfb xauth libxtst6 libxss1 libnss3 libasound2 desktop-file-utils | ||
mkdir -p /opt/orca | ||
cd /opt/orca | ||
wget https://github.com/plotly/orca/releases/download/v1.3.1/orca-1.3.1.AppImage | ||
sudo chmod +x orca-1.3.1.AppImage | ||
sudo ./orca-1.3.1.AppImage --appimage-extract | ||
sudo rm orca-1.3.1.AppImage | ||
sudo printf '#!/bin/bash \nargs=("$@") \nif [[ ! " ${args[@]} " =~ "--no-sandbox" ]]; then \n args+=("--no-sandbox") \nfi \nxvfb-run --auto-servernum --server-args "-screen 0 640x480x24" /opt/orca/squashfs-root/orca "${args[@]}"' > /usr/bin/orca \ | ||
sudo chmod +x /usr/bin/orca | ||
sudo orca graph '{ "data": [{"y": [1,2,1]}] }' -o fig.png | ||
- name: Install dependencies | ||
run: | | ||
pak::local_install_dev_deps(upgrade = TRUE) | ||
pak::pkg_install("rcmdcheck") | ||
shell: Rscript {0} | ||
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- name: Session info | ||
run: | | ||
options(width = 100) | ||
pkgs <- installed.packages()[, "Package"] | ||
sessioninfo::session_info(pkgs, include_base = TRUE) | ||
shell: Rscript {0} | ||
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- name: Check | ||
env: | ||
_R_CHECK_CRAN_INCOMING_: false | ||
run: | | ||
options(crayon.enabled = TRUE) | ||
rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | ||
shell: Rscript {0} | ||
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- name: Show testthat output | ||
if: always() | ||
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | ||
shell: bash | ||
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- name: Upload check results | ||
if: failure() | ||
uses: actions/upload-artifact@main | ||
with: | ||
name: ${{ matrix.config.os }}-r${{ matrix.config.r }}-results | ||
path: check | ||
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- name: Don't use tar from old Rtools to store the cache | ||
if: ${{ runner.os == 'Windows' && startsWith(steps.install-r.outputs.installed-r-version, '3.6' ) }} | ||
shell: bash | ||
run: echo "C:/Program Files/Git/usr/bin" >> $GITHUB_PATH |
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# Some tests make plot.ly HTTP requests and require a valid user account | ||
# (see test-plotly-filename.R). For security reasons, these tests should be | ||
# skipped on pull requests (the .travis.yml file uses encrypted credentials | ||
# & encrypted environment vars cannot be accessed on pull request builds) | ||
skip_if_not_master <- function() { | ||
r_version <- paste(R.version$major, R.version$minor, sep = ".") | ||
r_release <- rversions::r_release()$version | ||
is_release <- isTRUE(r_release == r_version) | ||
is_win <- .Platform$OS.type == "windows" | ||
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skip_cloud_tests <- function() { | ||
skip_on_cran() | ||
if (is.na(Sys.getenv("plotly_username", NA))) { | ||
return(skip("Testing plot.ly API calls requires a plotly account")) | ||
skip("Cloud testing requires a plotly account (plotly_username)") | ||
} | ||
if (is.na(Sys.getenv("plotly_api_key", NA))) { | ||
skip("Cloud testing requires a plotly account (plotly_api_key)") | ||
} | ||
if (!is_release || !is_win) { | ||
skip("Cloud testing is only run on Windows with the current release of R") | ||
} | ||
} | ||
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skip_shinytest_tests <- function() { | ||
skip_on_cran() | ||
skip_if_not_installed("shinytest") | ||
if (!grepl("true", Sys.getenv("SHINYTEST"), fixed = TRUE)) { | ||
skip("shinytest testing requires the SHINYTEST environment variable to be true") | ||
} | ||
is_pr <- grepl("^[0-9]+$", Sys.getenv("TRAVIS_PULL_REQUEST")) | ||
is_r_release <- Sys.getenv("TRAVIS_R_VERSION_STRING", "release") == "release" | ||
if (!is_pr && is_r_release) return(invisible(TRUE)) | ||
skip("plot.ly API calls are only tested on the master build on r-release") | ||
} |
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