I am currently working on creating a suite of tools to address challenges of applying ML in bioinformatics:

• biosets - Dataset management and integration in bioinformatics (Released).
• biofit - Model preprocessing and fitting solutions (90% complete).
• biorun - An autotrainer built on top of biosets and biofit (70% complete).
• bioserve - Tools for deploying, analyzing, and comparing bioinformatics models (50% complete).

I am also working on tools that facilitate the use of mamba and CLIP in medical imaging:

• mamba-clip - A tool for training mamba models in a distributed manner on medical images and associated text data.

For those interested in collaborating or discussing bioinformatics, machine learning, or AI in healthcare, feel free to reach out to me. I also am looking for people to join Kaggle competitions with, so if you are interested in that, let me know!

• Email: [email protected]
• LinkedIn: https://www.linkedin.com/in/patrick-smyth-9635731a4/
• Kaggle: https://www.kaggle.com/patrico49