Initial commit

.gitignore

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+*.o
+*.a
+*.la
+*.lo
+*.in
+*.swp
+build/
+lib/
+.vscode/
+

.gitmodules

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+[submodule "lib/GKlib"]
+	path = lib/GKlib
+	url = https://github.com/KarypisLab/GKlib

BUILD.txt

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+------------------------------------------------------------------------------
+Building requires 
+
+ - CMake 2.8, found at http://www.cmake.org/, as well as GNU make. 
+ - A export of the latest trunk of GKlib (see bellow).  
+
+Assumming that the above are available, two commands should suffice to 
+build the software:
+
+     $ make config
+     $ make
+
+
+GKlib
+-----
+Prior to running "make config" create a symbolic link to GKlib's trunk directory
+inside the top-level directory of rsuggest. For instance, the following command
+should do it:
+
+     $ ln -s ~/local/src/GKlib/trunk GKlib
+
+which assumes that you have checked out the latest version of GKlib in your
+~/local/src directory.
+
+
+Configuration
+-------------
+SLIM is primarily configured by passing options to make config. For example:
+
+     $ make config shared=1 cc=gcc-4.2
+
+would configure rsuggest to be built as a shared library using GCC 4.2.
+
+Common configuration options are:
+  cc=[compiler]   - The C compiler to use [default is determined by CMake]
+  shared=1        - Build a shared library instead of a static one 
+                    [off by default]
+  prefix=[PATH]   - Set the installation prefix [/usr/local/ by default]
+
+Advanced debugging related options:
+  gdb=1       - Build with support for GDB [off by default]
+  debug=1     - Enable debugging support [off by default]
+  assert=1    - Enable asserts [off by default]
+  assert2=1   - Enable very expensive asserts [off by default]
+
+
+Installation
+------------
+To install, run
+
+    $ make install
+
+The default installation prefix is /usr/local. To pick an installation 
+prefix pass prefix=[path] to make config. For example,
+
+    $ make config prefix=~/myroot/
+
+will cause the program to be installed in ~/myroot/ when make install 
+is run.
+
+
+Other make commands
+-------------------
+   $ make uninstall 
+          Removes all files installed by 'make install'.
+
+   $ make clean 
+          Removes all object files but retains the configuration options.
+
+   $ make distclean 
+          Performs clean and completely removes the build directory.
+
+------------------------------------------------------------------------------

CMakeLists.txt

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+cmake_minimum_required(VERSION 2.8)
+project(SLIM)
+
+set(SHARED FALSE CACHE BOOL "build a shared library")
+set(WITH_MKL FALSE CACHE BOOL "build using MKL")
+
+if(MSVC)
+  set(SLIM_INSTALL FALSE)
+else()
+  set(SLIM_INSTALL TRUE)
+endif()
+
+# Configure libslim library.
+if(SHARED)
+  set(SLIM_LIBRARY_TYPE SHARED)
+else()
+  set(SLIM_LIBRARY_TYPE STATIC)
+endif(SHARED)
+
+if(WITH_MKL)
+  message(STATUS "*** Building WITH MKL support!")
+  set(USE_MKL true)
+else()
+  message(STATUS "*** Building WITHOUT MKL support!")
+  set(USE_MKL false)
+endif(WITH_MKL)
+
+if (${CMAKE_SYSTEM_NAME} MATCHES "Darwin")
+  set(MACOSX TRUE)
+endif()
+
+if (OPENMP)
+  set(__OPENMP__ TRUE)
+endif()
+
+# Add GK's standard cmake settings
+include(./conf/gkbuild.cmake)
+
+# Include directories
+include_directories(include)
+include_directories(lib/GKlib)
+
+# Link directories 
+if (MACOSX)
+  link_directories(${PROJECT_SOURCE_DIR}/lib/GKlib/build/Darwin-x86_64/)
+else()  
+  link_directories(${PROJECT_SOURCE_DIR}/lib/GKlib/build/Linux-x86_64/)
+endif()
+
+
+# Recursively look for CMakeLists.txt in subdirs.
+add_subdirectory("include")
+add_subdirectory("src/libslim")
+add_subdirectory("src/programs")
+

Makefile

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+# Configuration options.
+gdb        = not-set
+assert     = not-set
+assert2    = not-set
+debug      = not-set
+gprof      = not-set
+openmp     = yes
+prefix     = not-set
+gklib_path = not-set
+bcls_path  = not-set
+shared     = not-set
+with_mkl   = not-set
+cc         = /usr/bin/gcc
+cxx        = /usr/bin/g++
+#cc         = gcc-mp-4.9
+#cxx        = g++-mp-4.9
+
+#===============================================================
+# There should be no need to modify beyond this point
+
+cputype = $(shell uname -m | sed "s/\\ /_/g")
+systype = $(shell uname -s)
+
+BUILDDIR = build/$(systype)-$(cputype)
+
+# Process configuration options.
+CONFIG_FLAGS = -DCMAKE_VERBOSE_MAKEFILE=1
+ifeq ($(gklib_path), not-set)
+    gklib_path = GKlib
+endif
+#CONFIG_FLAGS += -DGKLIB_PATH=$(abspath $(gklib_path))
+ifneq ($(gdb), not-set)
+    CONFIG_FLAGS += -DGDB=$(gdb)
+endif
+ifneq ($(assert), not-set)
+    CONFIG_FLAGS += -DASSERT=$(assert)
+endif
+ifneq ($(assert2), not-set)
+    CONFIG_FLAGS += -DASSERT2=$(assert2)
+endif
+ifneq ($(debug), not-set)
+    CONFIG_FLAGS += -DDEBUG=$(debug)
+endif
+ifneq ($(gprof), not-set)
+    CONFIG_FLAGS += -DGPROF=$(gprof)
+endif
+ifneq ($(openmp), not-set)
+    CONFIG_FLAGS += -DOPENMP=$(openmp)
+endif
+ifneq ($(prefix), not-set)
+    CONFIG_FLAGS += -DCMAKE_INSTALL_PREFIX=$(prefix)
+endif
+ifneq ($(shared), not-set)
+    CONFIG_FLAGS += -DSHARED=1
+endif
+ifneq ($(with_mkl), not-set)
+    CONFIG_FLAGS += -DWITH_MKL=1
+endif
+ifneq ($(cc), not-set)
+    CONFIG_FLAGS += -DCMAKE_C_COMPILER=$(cc)
+endif
+ifneq ($(cxx), not-set)
+    CONFIG_FLAGS += -DCMAKE_CXX_COMPILER=$(cxx)
+endif
+
+VERNUM=1.0.1
+PKGNAME=slim-$(VERNUM)
+
+define run-config
+mkdir -p $(BUILDDIR)
+cd $(BUILDDIR) && cmake -DCMAKE_EXPORT_COMPILE_COMMANDS=1 $(CURDIR) $(CONFIG_FLAGS)
+endef
+
+all clean install:
+	@if [ ! -f $(BUILDDIR)/Makefile ]; then \
+		more BUILD.txt; \
+	else \
+	  	make -C $(BUILDDIR) $@ $(MAKEFLAGS); \
+	fi
+
+uninstall:
+	xargs rm < $(BUILDDIR)/install_manifest.txt
+
+config: distclean
+	$(run-config)
+
+distclean:
+	rm -rf $(BUILDDIR)
+
+remake:
+	find . -name CMakeLists.txt -exec touch {} ';'
+
+dist:
+	utils/mkdist.sh $(PKGNAME)
+
+.PHONY: config distclean all clean install uninstall remake dist