research-software-ecosystem · bgruening · Feb 28, 2020 · Feb 28, 2020 · Feb 28, 2020
diff --git a/data/1000genomes/1000genomesbioschemas.jsonld b/data/1000genomes/1000genomesbioschemas.jsonld
@@ -37,16 +37,16 @@
           "@id": "edam:operation_3202"
         },
         {
-          "@id": "edam:operation_3196"
+          "@id": "edam:operation_3431"
         },
         {
-          "@id": "edam:operation_3431"
+          "@id": "edam:operation_3196"
         }
       ],
       "sc:name": "1000Genomes",
       "sc:operatingSystem": [
-        "Linux",
         "Windows",
+        "Linux",
         "Mac"
       ],
       "sc:url": "http://www.internationalgenome.org"

diff --git a/data/1000genomes_assembly_converter/1000genomes_assembly_converterbioschemas.jsonld b/data/1000genomes_assembly_converter/1000genomes_assembly_converterbioschemas.jsonld
@@ -16,9 +16,9 @@
   "sc:description": "Map your data to the current assembly.",
   "sc:name": "1000Genomes assembly converter",
   "sc:operatingSystem": [
-    "Mac",
+    "Linux",
     "Windows",
-    "Linux"
+    "Mac"
   ],
   "sc:provider": "EMBL-EBI",
   "sc:url": "http://browser.1000genomes.org/tools.html",

diff --git a/data/1000genomes_data_slicer/1000genomes_data_slicerbioschemas.jsonld b/data/1000genomes_data_slicer/1000genomes_data_slicerbioschemas.jsonld
@@ -16,9 +16,9 @@
   "sc:description": "Get a subset of data from a BAM or VCF file.",
   "sc:name": "1000Genomes data slicer",
   "sc:operatingSystem": [
-    "Windows",
+    "Mac",
     "Linux",
-    "Mac"
+    "Windows"
   ],
   "sc:provider": "EMBL-EBI",
   "sc:url": "http://browser.1000genomes.org/tools.html",

diff --git a/data/1000genomes_id_history_converter/1000genomes_id_history_converterbioschemas.jsonld b/data/1000genomes_id_history_converter/1000genomes_id_history_converterbioschemas.jsonld
@@ -16,8 +16,8 @@
   "sc:description": "Convert a set of Ensembl IDs from a previous release into their current equivalents.",
   "sc:name": "1000Genomes ID history converter",
   "sc:operatingSystem": [
-    "Linux",
     "Mac",
+    "Linux",
     "Windows"
   ],
   "sc:provider": "EMBL-EBI",

diff --git a/...000genomes_variation_pattern_finder/1000genomes_variation_pattern_finderbioschemas.jsonld b/...000genomes_variation_pattern_finder/1000genomes_variation_pattern_finderbioschemas.jsonld
@@ -20,9 +20,9 @@
   "sc:description": "Identify variation patterns in a chromosomal region of interest for different individuals.",
   "sc:name": "1000Genomes Variation Pattern Finder",
   "sc:operatingSystem": [
-    "Mac",
+    "Linux",
     "Windows",
-    "Linux"
+    "Mac"
   ],
   "sc:provider": "EMBL-EBI",
   "sc:url": "http://browser.1000genomes.org/tools.html",

diff --git a/data/13check_rna/13check_rnabioschemas.jsonld b/data/13check_rna/13check_rnabioschemas.jsonld
@@ -11,17 +11,17 @@
   "@id": "https://bio.tools/13Check_RNA",
   "@type": "sc:SoftwareApplication",
   "biotools:primaryContact": [
-    "J. A. Vila",
-    "A. A. Icazatti"
+    "A. A. Icazatti",
+    "J. A. Vila"
   ],
   "sc:additionalType": "Library",
   "sc:description": "Tool to evaluate 13C chemical shift assignments of RNA.",
   "sc:license": "MIT",
   "sc:name": "13Check_RNA",
   "sc:operatingSystem": [
-    "Linux",
+    "Mac",
     "Windows",
-    "Mac"
+    "Linux"
   ],
   "sc:url": "https://github.com/BIOS-IMASL/13Check_RNA"
 }
diff --git a/data/2d-mh/2d-mhbioschemas.jsonld b/data/2d-mh/2d-mhbioschemas.jsonld
@@ -11,17 +11,17 @@
   "@id": "https://bio.tools/2d-mh",
   "@type": "sc:SoftwareApplication",
   "biotools:primaryContact": [
-    "Xiao Lab",
-    "Xuan Xiao"
+    "Xuan Xiao",
+    "Xiao Lab"
   ],
   "sc:additionalType": "Web application",
   "sc:citation": "pubmed:20696175",
   "sc:description": "Web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids.",
   "sc:name": "2D-MH",
   "sc:operatingSystem": [
     "Windows",
-    "Linux",
-    "Mac"
+    "Mac",
+    "Linux"
   ],
   "sc:url": "http://www.jci-bioinfo.cn/pplot/2D-MH"
 }
diff --git a/data/2d-page/2d-pagebioschemas.jsonld b/data/2d-page/2d-pagebioschemas.jsonld
@@ -15,9 +15,9 @@
   "sc:description": "2D-PAGE database.",
   "sc:name": "2D-PAGE",
   "sc:operatingSystem": [
+    "Mac",
     "Linux",
-    "Windows",
-    "Mac"
+    "Windows"
   ],
   "sc:provider": "University of Siena, Italy",
   "sc:url": "http://www.bio-mol.unisi.it/cgi-bin/2d/2d.cgi"

diff --git a/data/2dprot/2dprotbioschemas.jsonld b/data/2dprot/2dprotbioschemas.jsonld
@@ -14,9 +14,9 @@
   "sc:description": "Visualization of protein secondary structure via 2D diagrams. The 2D diagrams are based on whole protein family and they take into account 2D structure of the protein family members.",
   "sc:name": "2DProt",
   "sc:operatingSystem": [
-    "Mac",
+    "Linux",
     "Windows",
-    "Linux"
+    "Mac"
   ],
   "sc:url": "http://78.128.250.85/2DProt/"
 }
diff --git a/data/2dss/2dssbioschemas.jsonld b/data/2dss/2dssbioschemas.jsonld
@@ -12,16 +12,16 @@
   "@type": "sc:SoftwareApplication",
   "biotools:primaryContact": "Juliana S.. Bernardes",
   "sc:additionalType": [
-    "Web application",
-    "Web service"
+    "Web service",
+    "Web application"
   ],
   "sc:description": "Web server for protein secondary structure visualization.",
   "sc:license": "Unlicense",
   "sc:name": "2dSS",
   "sc:operatingSystem": [
     "Windows",
-    "Linux",
-    "Mac"
+    "Mac",
+    "Linux"
   ],
   "sc:url": "http://genome.lcqb.upmc.fr/2dss/"
 }
diff --git a/data/2struccompare/2struccomparebioschemas.jsonld b/data/2struccompare/2struccomparebioschemas.jsonld
@@ -13,27 +13,27 @@
       "@id": "https://bio.tools/2StrucCompare",
       "@type": "sc:SoftwareApplication",
       "biotools:primaryContact": [
-        "Robert W. Janes",
-        "Elliot Drew"
+        "Elliot Drew",
+        "Robert W. Janes"
       ],
       "sc:additionalType": [
-        "Web service",
-        "Web application"
+        "Web application",
+        "Web service"
       ],
       "sc:citation": [
-        "pmcid:PMC6602421",
         "pubmed:31114904",
         {
           "@id": "https://doi.org/10.1093/NAR/GKZ456"
-        }
+        },
+        "pmcid:PMC6602421"
       ],
       "sc:description": "Webserver for the comparison of secondary structure algorithms and the secondary structure of protein structures.",
       "sc:featureList": [
         {
-          "@id": "edam:operation_2488"
+          "@id": "edam:operation_0319"
         },
         {
-          "@id": "edam:operation_0319"
+          "@id": "edam:operation_2488"
         },
         {
           "@id": "edam:operation_0267"
@@ -42,9 +42,9 @@
       "sc:license": "Unlicense",
       "sc:name": "2StrucCompare",
       "sc:operatingSystem": [
-        "Linux",
+        "Mac",
         "Windows",
-        "Mac"
+        "Linux"
       ],
       "sc:url": "http://2struccompare.cryst.bbk.ac.uk/index.php"
     },

diff --git a/data/3d-blast/3d-blastbioschemas.jsonld b/data/3d-blast/3d-blastbioschemas.jsonld
@@ -17,21 +17,21 @@
         "Web application"
       ],
       "sc:citation": [
+        "pmcid:PMC1868941",
+        "pubmed:17335583",
         {
           "@id": "https://doi.org/10.1186/gb-2007-8-3-r31"
-        },
-        "pmcid:PMC1868941",
-        "pubmed:17335583"
+        }
       ],
       "sc:description": "3D-BLAST is a very fast and accurate method for discovering the homologous proteins and evolutionary classifications of a newly determined protein structure.",
       "sc:featureList": {
         "@id": "edam:operation_2479"
       },
       "sc:name": "3D-BLAST beta",
       "sc:operatingSystem": [
-        "Linux",
+        "Windows",
         "Mac",
-        "Windows"
+        "Linux"
       ],
       "sc:url": "http://3d-blast.life.nctu.edu.tw/",
       "sc:version": "1.02"

diff --git a/data/3d-dart/3d-dartbioschemas.jsonld b/data/3d-dart/3d-dartbioschemas.jsonld
@@ -9,10 +9,6 @@
     "xsd": "http://www.w3.org/2001/XMLSchema#"
   },
   "@graph": [
-    {
-      "@id": "http://orcid.org/0000-0001-7369-1322",
-      "@type": "schema:Organization"
-    },
     {
       "@id": "https://bio.tools/3d-dart",
       "@type": "sc:SoftwareApplication",
@@ -26,15 +22,19 @@
       "sc:description": "A web server for generation of 3D-structural DNA models with a defined conformation by providing control over both ‘global’ and ‘local’ conformational features.",
       "sc:name": "3D-DART",
       "sc:operatingSystem": [
-        "Windows",
         "Linux",
+        "Windows",
         "Mac"
       ],
       "sc:provider": {
         "@id": "http://orcid.org/0000-0001-7369-1322"
       },
       "sc:url": "https://milou.science.uu.nl/services/3DDART/",
       "sc:version": "1"
+    },
+    {
+      "@id": "http://orcid.org/0000-0001-7369-1322",
+      "@type": "schema:Organization"
     }
   ]
 }
diff --git a/data/3d-e-chem/3d-e-chembioschemas.jsonld b/data/3d-e-chem/3d-e-chembioschemas.jsonld
@@ -13,35 +13,35 @@
       "@id": "https://bio.tools/3d-e-chem",
       "@type": "sc:SoftwareApplication",
       "biotools:primaryContact": [
-        "C. De. Graaf",
+        "S. Verhoeven",
         "Ross Mcguire",
-        "S. Verhoeven"
+        "C. De. Graaf"
       ],
       "sc:additionalType": "Desktop application",
       "sc:citation": [
+        "pmcid:PMC5342320",
         "pubmed:28125221",
         {
           "@id": "https://doi.org/10.1021/ACS.JCIM.6B00686"
-        },
-        "pmcid:PMC5342320"
+        }
       ],
       "sc:description": "Structural Cheminformatics Research Infrastructure in a Freely Available Virtual Machine.",
       "sc:featureList": [
         {
           "@id": "edam:operation_2414"
         },
         {
-          "@id": "edam:operation_2406"
+          "@id": "edam:operation_3646"
         },
         {
-          "@id": "edam:operation_3646"
+          "@id": "edam:operation_2406"
         }
       ],
       "sc:name": "3D-e-Chem-VM",
       "sc:operatingSystem": [
-        "Linux",
+        "Mac",
         "Windows",
-        "Mac"
+        "Linux"
       ],
       "sc:url": "http://3d-e-chem.github.io/3D-e-Chem-VM/"
     },

diff --git a/data/3d-footprint/3d-footprintbioschemas.jsonld b/data/3d-footprint/3d-footprintbioschemas.jsonld
@@ -16,9 +16,9 @@
   "sc:description": "3D-footprint provides estimates of binding specificity for all protein-DNA complexes available at the Protein Data Bank. The web interface allows the user to: (i) browse DNA-binding proteins by keyword; (ii) find proteins that recognize a similar DNA motif and (iii) BLAST similar DNA-binding proteins, highlighting interface residues in the resulting alignments. Comparisons with expert-curated databases RegulonDB and TRANSFAC support the quality of structure-based estimates of specificity.",
   "sc:name": "3D-Footprint",
   "sc:operatingSystem": [
+    "Windows",
     "Mac",
-    "Linux",
-    "Windows"
+    "Linux"
   ],
   "sc:url": "http://floresta.eead.csic.es/3dfootprint"
 }
diff --git a/data/3d-partner/3d-partnerbioschemas.jsonld b/data/3d-partner/3d-partnerbioschemas.jsonld
@@ -11,18 +11,18 @@
   "@id": "https://bio.tools/3d-partner",
   "@type": "sc:SoftwareApplication",
   "biotools:primaryContact": [
-    "Jinn-Moon Yang",
-    "Yu-Shu Lo"
+    "Yu-Shu Lo",
+    "Jinn-Moon Yang"
   ],
   "sc:additionalType": "Web application",
   "sc:citation": "pubmed:17517763",
   "sc:description": "Tool to predict interacting partners and binding models of a query protein sequence through the analysis of structural complexes.",
   "sc:license": "Unlicense",
   "sc:name": "3D-partner",
   "sc:operatingSystem": [
-    "Mac",
+    "Linux",
     "Windows",
-    "Linux"
+    "Mac"
   ],
   "sc:url": "http://gemdock.life.nctu.edu.tw/3d-partner/"
 }
diff --git a/data/3d-pssm/3d-pssmbioschemas.jsonld b/data/3d-pssm/3d-pssmbioschemas.jsonld
@@ -16,9 +16,9 @@
   "sc:description": "Protein fold recognition using 1d and 3d sequence profiles coupled with secondary structure and solvation potential information.",
   "sc:name": "3D-pssm",
   "sc:operatingSystem": [
+    "Mac",
     "Windows",
-    "Linux",
-    "Mac"
+    "Linux"
   ],
   "sc:url": "http://www.sbg.bio.ic.ac.uk/~3dpssm/index2.html"
 }
diff --git a/data/3dbionotes/3dbionotesbioschemas.jsonld b/data/3dbionotes/3dbionotesbioschemas.jsonld
@@ -15,14 +15,14 @@
   "sc:description": "Web based application designed to integrate protein structure, protein sequence and protein annotations in a unique graphical environment. The current version of the application offers a unified, enriched and interactive view of EMDB volumes, PDB structures and Uniprot sequences where the protein annotations stored in Uniprot, Immune Epitope DB, Phospho Site Plus, BioMuta and dSysMap can be explored interactively at sequence and structural level.",
   "sc:name": "3DBIONOTES",
   "sc:operatingSystem": [
-    "Windows",
+    "Mac",
     "Linux",
-    "Mac"
+    "Windows"
   ],
   "sc:provider": [
+    "cnb.csic.es",
     "ELIXIR-ES",
-    "INB",
-    "cnb.csic.es"
+    "INB"
   ],
   "sc:url": "http://3dbionotes.cnb.csic.es/ws",
   "sc:version": "v3"

diff --git a/data/3dem_loupe/3dem_loupebioschemas.jsonld b/data/3dem_loupe/3dem_loupebioschemas.jsonld
@@ -16,8 +16,8 @@
   "sc:description": "3DEM Loupe is a web-server that allows normal mode analysis of any uploaded electron microscopy volume. Results can be explored in 3 dimensions through animations and movies.",
   "sc:name": "3DEM Loupe",
   "sc:operatingSystem": [
-    "Linux",
     "Windows",
+    "Linux",
     "Mac"
   ],
   "sc:url": "http://3demloupe.cnb.csic.es"