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remove 10.1038/nmeth.3252 from bioconda #94

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1 change: 0 additions & 1 deletion data/a4base/bioconda_a4base.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,6 @@ description: Automated Affymetrix Array Analysis
home: https://bioconductor.org/packages/3.10/bioc/html/a4Base.html
identifiers:
- biotools:a4base
- doi:10.1038/nmeth.3252
license: GPL-3
license_file: /lib/R/share/licenses/GPL-3
name: bioconductor-a4base
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1 change: 0 additions & 1 deletion data/a4core/bioconda_a4core.yaml
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Expand Up @@ -3,7 +3,6 @@ description: Automated Affymetrix Array Analysis Core Package
home: https://bioconductor.org/packages/3.10/bioc/html/a4Core.html
identifiers:
- biotools:a4core
- doi:10.1038/nmeth.3252
license: GPL-3
license_file: /lib/R/share/licenses/GPL-3
name: bioconductor-a4core
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1 change: 0 additions & 1 deletion data/a4preproc/bioconda_a4preproc.yaml
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Expand Up @@ -3,7 +3,6 @@ description: Automated Affymetrix Array Analysis Preprocessing Package
home: https://bioconductor.org/packages/3.10/bioc/html/a4Preproc.html
identifiers:
- biotools:a4preproc
- doi:10.1038/nmeth.3252
license: GPL-3
license_file: /lib/R/share/licenses/GPL-3
name: bioconductor-a4preproc
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1 change: 0 additions & 1 deletion data/a4reporting/bioconda_a4reporting.yaml
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Expand Up @@ -3,7 +3,6 @@ description: Automated Affymetrix Array Analysis Reporting Package
home: https://bioconductor.org/packages/3.10/bioc/html/a4Reporting.html
identifiers:
- biotools:a4reporting
- doi:10.1038/nmeth.3252
license: GPL-3
license_file: /lib/R/share/licenses/GPL-3
name: bioconductor-a4reporting
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1 change: 0 additions & 1 deletion data/affycompatible/bioconda_affycompatible.yaml
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Expand Up @@ -7,7 +7,6 @@ description: This package provides an interface to Affymetrix chip annotation an
home: https://bioconductor.org/packages/3.10/bioc/html/AffyCompatible.html
identifiers:
- biotools:affycompatible
- doi:10.1038/nmeth.3252
license: Artistic-2.0
name: bioconductor-affycompatible
summary: Affymetrix GeneChip software compatibility
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1 change: 0 additions & 1 deletion data/affycontam/bioconda_affycontam.yaml
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Expand Up @@ -3,7 +3,6 @@ description: structured corruption of cel file data to demonstrate QA effectiven
home: https://bioconductor.org/packages/3.10/bioc/html/affyContam.html
identifiers:
- biotools:affycontam
- doi:10.1038/nmeth.3252
license: Artistic-2.0
name: bioconductor-affycontam
summary: structured corruption of affymetrix cel file data
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1 change: 0 additions & 1 deletion data/affycoretools/bioconda_affycoretools.yaml
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Expand Up @@ -4,7 +4,6 @@ description: Various wrapper functions that have been written to streamline the
home: https://bioconductor.org/packages/3.10/bioc/html/affycoretools.html
identifiers:
- biotools:affycoretools
- doi:10.1038/nmeth.3252
license: Artistic-2.0
name: bioconductor-affycoretools
summary: Functions useful for those doing repetitive analyses with Affymetrix GeneChips
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1 change: 0 additions & 1 deletion data/affyexpress/bioconda_affyexpress.yaml
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Expand Up @@ -5,7 +5,6 @@ description: The purpose of this package is to provide a comprehensive and easy-
home: https://bioconductor.org/packages/3.10/bioc/html/AffyExpress.html
identifiers:
- biotools:affyexpress
- doi:10.1038/nmeth.3252
license: LGPL
license_file: /lib/R/share/licenses/LGPL-3
name: bioconductor-affyexpress
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1 change: 0 additions & 1 deletion data/affyio/bioconda_affyio.yaml
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Expand Up @@ -4,7 +4,6 @@ description: Routines for parsing Affymetrix data files based upon file format i
home: https://bioconductor.org/packages/3.10/bioc/html/affyio.html
identifiers:
- biotools:affyio
- doi:10.1038/nmeth.3252
license: LGPL (>= 2)
license_file: /lib/R/share/licenses/LGPL-3
name: bioconductor-affyio
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1 change: 0 additions & 1 deletion data/annaffy/bioconda_annaffy.yaml
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Expand Up @@ -6,7 +6,6 @@ description: Functions for handling data from Bioconductor Affymetrix annotation
home: https://bioconductor.org/packages/3.10/bioc/html/annaffy.html
identifiers:
- biotools:annaffy
- doi:10.1038/nmeth.3252
license: LGPL
license_file: /lib/R/share/licenses/LGPL-3
name: bioconductor-annaffy
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1 change: 0 additions & 1 deletion data/annotate/bioconda_annotate.yaml
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Expand Up @@ -3,7 +3,6 @@ description: Using R enviroments for annotation.
home: https://bioconductor.org/packages/3.10/bioc/html/annotate.html
identifiers:
- biotools:annotate
- doi:10.1038/nmeth.3252
license: Artistic-2.0
name: bioconductor-annotate
summary: Annotation for microarrays
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1 change: 0 additions & 1 deletion data/annotationdbi/bioconda_annotationdbi.yaml
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Expand Up @@ -4,7 +4,6 @@ description: Implements a user-friendly interface for querying SQLite-based anno
home: https://bioconductor.org/packages/3.10/bioc/html/AnnotationDbi.html
identifiers:
- biotools:annotationdbi
- doi:10.1038/nmeth.3252
license: Artistic-2.0
name: bioconductor-annotationdbi
summary: Manipulation of SQLite-based annotations in Bioconductor
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1 change: 0 additions & 1 deletion data/annotationforge/bioconda_annotationforge.yaml
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Expand Up @@ -4,7 +4,6 @@ description: Provides code for generating Annotation packages and their database
home: https://bioconductor.org/packages/3.10/bioc/html/AnnotationForge.html
identifiers:
- biotools:annotationforge
- doi:10.1038/nmeth.3252
license: Artistic-2.0
name: bioconductor-annotationforge
summary: Tools for building SQLite-based annotation data packages
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1 change: 0 additions & 1 deletion data/annotationfuncs/bioconda_annotationfuncs.yaml
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Expand Up @@ -4,7 +4,6 @@ description: Functions for handling translating between different identifieres u
home: https://bioconductor.org/packages/3.10/bioc/html/AnnotationFuncs.html
identifiers:
- biotools:annotationfuncs
- doi:10.1038/nmeth.3252
license: GPL-2
license_file: /lib/R/share/licenses/GPL-2
name: bioconductor-annotationfuncs
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1 change: 0 additions & 1 deletion data/annotationhub/bioconda_annotationhub.yaml
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Expand Up @@ -9,7 +9,6 @@ description: This package provides a client for the Bioconductor AnnotationHub w
home: https://bioconductor.org/packages/3.10/bioc/html/AnnotationHub.html
identifiers:
- biotools:annotationhub
- doi:10.1038/nmeth.3252
license: Artistic-2.0
name: bioconductor-annotationhub
summary: Client to access AnnotationHub resources
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1 change: 0 additions & 1 deletion data/annotationhubdata/bioconda_annotationhubdata.yaml
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Expand Up @@ -4,7 +4,6 @@ description: These recipes convert a wide variety and a growing number of public
home: https://bioconductor.org/packages/3.10/bioc/html/AnnotationHubData.html
identifiers:
- biotools:annotationhubdata
- doi:10.1038/nmeth.3252
license: Artistic-2.0
name: bioconductor-annotationhubdata
summary: Transform public data resources into Bioconductor Data Structures
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1 change: 0 additions & 1 deletion data/arraytools/bioconda_arraytools.yaml
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Expand Up @@ -9,7 +9,6 @@ description: This package is designed to provide solutions for quality assessmen
home: https://bioconductor.org/packages/3.10/bioc/html/ArrayTools.html
identifiers:
- biotools:arraytools
- doi:10.1038/nmeth.3252
license: LGPL (>= 2.0)
license_file: /lib/R/share/licenses/LGPL-3
name: bioconductor-arraytools
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1 change: 0 additions & 1 deletion data/aspli/bioconda_aspli.yaml
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Expand Up @@ -3,7 +3,6 @@ description: Integrative pipeline for the analysis of alternative splicing using
home: https://bioconductor.org/packages/3.10/bioc/html/ASpli.html
identifiers:
- biotools:aspli
- doi:10.1038/nmeth.3252
license: GPL
license_file: /lib/R/share/licenses/GPL-3
name: bioconductor-aspli
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1 change: 0 additions & 1 deletion data/bader/bioconda_bader.yaml
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Expand Up @@ -7,7 +7,6 @@ description: For RNA sequencing count data, BADER fits a Bayesian hierarchical m
home: https://bioconductor.org/packages/3.10/bioc/html/BADER.html
identifiers:
- biotools:bader
- doi:10.1038/nmeth.3252
license: GPL-2
license_file: /lib/R/share/licenses/GPL-2
name: bioconductor-bader
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1 change: 0 additions & 1 deletion data/badregionfinder/bioconda_badregionfinder.yaml
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Expand Up @@ -6,7 +6,6 @@ description: BadRegionFinder is a package for identifying regions with a bad, ac
home: https://bioconductor.org/packages/3.10/bioc/html/BadRegionFinder.html
identifiers:
- biotools:badregionfinder
- doi:10.1038/nmeth.3252
license: LGPL-3
license_file: /lib/R/share/licenses/LGPL-3
name: bioconductor-badregionfinder
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1 change: 0 additions & 1 deletion data/bamsignals/bioconda_bamsignals.yaml
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Expand Up @@ -5,7 +5,6 @@ description: This package allows to efficiently obtain count vectors from indexe
home: https://bioconductor.org/packages/3.10/bioc/html/bamsignals.html
identifiers:
- biotools:bamsignals
- doi:10.1038/nmeth.3252
license: GPL-2
license_file: /lib/R/share/licenses/GPL-2
name: bioconductor-bamsignals
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1 change: 0 additions & 1 deletion data/basespacer/bioconda_basespacer.yaml
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Expand Up @@ -4,7 +4,6 @@ description: A rich R interface to Illumina's BaseSpace cloud computing environm
home: https://bioconductor.org/packages/3.10/bioc/html/BaseSpaceR.html
identifiers:
- biotools:basespacer
- doi:10.1038/nmeth.3252
license: Apache License 2.0
name: bioconductor-basespacer
summary: R SDK for BaseSpace RESTful API
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1 change: 0 additions & 1 deletion data/beat/bioconda_beat.yaml
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Expand Up @@ -3,7 +3,6 @@ description: Model-based analysis of single-cell methylation data
home: https://bioconductor.org/packages/3.10/bioc/html/BEAT.html
identifiers:
- biotools:beat
- doi:10.1038/nmeth.3252
license: LGPL (>= 3.0)
license_file: /lib/R/share/licenses/LGPL-3
name: bioconductor-beat
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1 change: 0 additions & 1 deletion data/bgafun/bioconda_bgafun.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,6 @@ description: A method to identify specifity determining residues in protein fami
home: https://bioconductor.org/packages/3.10/bioc/html/bgafun.html
identifiers:
- biotools:bgafun
- doi:10.1038/nmeth.3252
license: Artistic-2.0
name: bioconductor-bgafun
summary: BGAfun A method to identify specifity determining residues in protein families
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1 change: 0 additions & 1 deletion data/bicare/bioconda_bicare.yaml
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Expand Up @@ -3,7 +3,6 @@ description: Biclustering Analysis and Results Exploration
home: https://bioconductor.org/packages/3.10/bioc/html/BicARE.html
identifiers:
- biotools:bicare
- doi:10.1038/nmeth.3252
license: GPL-2
license_file: /lib/R/share/licenses/GPL-2
name: bioconductor-bicare
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1 change: 0 additions & 1 deletion data/biocgraph/bioconda_biocgraph.yaml
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Expand Up @@ -4,7 +4,6 @@ description: This package provides examples and code that make use of the differ
home: https://bioconductor.org/packages/3.10/bioc/html/biocGraph.html
identifiers:
- biotools:biocgraph
- doi:10.1038/nmeth.3252
license: Artistic-2.0
name: bioconductor-biocgraph
summary: Graph examples and use cases in Bioinformatics
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1 change: 0 additions & 1 deletion data/biocstyle/bioconda_biocstyle.yaml
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Expand Up @@ -4,7 +4,6 @@ description: Provides standard formatting styles for Bioconductor PDF and HTML d
home: https://bioconductor.org/packages/3.10/bioc/html/BiocStyle.html
identifiers:
- biotools:biocstyle
- doi:10.1038/nmeth.3252
license: Artistic-2.0
name: bioconductor-biocstyle
summary: Standard styles for vignettes and other Bioconductor documents
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1 change: 0 additions & 1 deletion data/biocviews/bioconda_biocviews.yaml
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Expand Up @@ -6,7 +6,6 @@ description: Infrastructure to support 'views' used to classify Bioconductor pac
home: https://bioconductor.org/packages/3.10/bioc/html/biocViews.html
identifiers:
- biotools:biocviews
- doi:10.1038/nmeth.3252
license: Artistic-2.0
name: bioconductor-biocviews
summary: Categorized views of R package repositories
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1 change: 0 additions & 1 deletion data/biodist/bioconda_biodist.yaml
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Expand Up @@ -3,7 +3,6 @@ description: A collection of software tools for calculating distance measures.
home: https://bioconductor.org/packages/3.10/bioc/html/bioDist.html
identifiers:
- biotools:biodist
- doi:10.1038/nmeth.3252
license: Artistic-2.0
name: bioconductor-biodist
summary: Different distance measures
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1 change: 0 additions & 1 deletion data/biomformat/bioconda_biomformat.yaml
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Expand Up @@ -10,7 +10,6 @@ description: This is an R package for interfacing with the BIOM format. This pac
home: https://bioconductor.org/packages/3.10/bioc/html/biomformat.html
identifiers:
- biotools:biomformat
- doi:10.1038/nmeth.3252
license: GPL-2
license_file: /lib/R/share/licenses/GPL-2
name: bioconductor-biomformat
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1 change: 0 additions & 1 deletion data/biomvcclass/bioconda_biomvcclass.yaml
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Expand Up @@ -3,7 +3,6 @@ description: Creates classes used in model-view-controller (MVC) design
home: https://bioconductor.org/packages/3.10/bioc/html/BioMVCClass.html
identifiers:
- biotools:biomvcclass
- doi:10.1038/nmeth.3252
license: LGPL
license_file: /lib/R/share/licenses/LGPL-3
name: bioconductor-biomvcclass
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1 change: 0 additions & 1 deletion data/biostrings/bioconda_biostrings.yaml
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Expand Up @@ -4,7 +4,6 @@ description: Memory efficient string containers, string matching algorithms, and
home: https://bioconductor.org/packages/3.10/bioc/html/Biostrings.html
identifiers:
- biotools:biostrings
- doi:10.1038/nmeth.3252
license: Artistic-2.0
name: bioconductor-biostrings
summary: Efficient manipulation of biological strings
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1 change: 0 additions & 1 deletion data/biosvd/bioconda_biosvd.yaml
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Expand Up @@ -21,7 +21,6 @@ description: The biosvd package contains functions to reduce the input data set
home: https://bioconductor.org/packages/3.10/bioc/html/biosvd.html
identifiers:
- biotools:biosvd
- doi:10.1038/nmeth.3252
license: Artistic-2.0
name: bioconductor-biosvd
summary: Package for high-throughput data processing, outlier detection, noise removal
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1 change: 0 additions & 1 deletion data/biovizbase/bioconda_biovizbase.yaml
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Expand Up @@ -6,7 +6,6 @@ description: The biovizBase package is designed to provide a set of utilities, c
home: https://bioconductor.org/packages/3.10/bioc/html/biovizBase.html
identifiers:
- biotools:biovizbase
- doi:10.1038/nmeth.3252
license: Artistic-2.0
name: bioconductor-biovizbase
summary: Basic graphic utilities for visualization of genomic data.
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1 change: 0 additions & 1 deletion data/blima/bioconda_blima.yaml
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Expand Up @@ -10,7 +10,6 @@ description: Package blima includes several algorithms for the preprocessing of
home: https://bioconductor.org/packages/3.10/bioc/html/blima.html
identifiers:
- biotools:blima
- doi:10.1038/nmeth.3252
license: GPL-3
license_file: /lib/R/share/licenses/GPL-3
name: bioconductor-blima
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1 change: 0 additions & 1 deletion data/bsgenome/bioconda_bsgenome.yaml
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Expand Up @@ -3,7 +3,6 @@ description: Infrastructure shared by all the Biostrings-based genome data packa
home: https://bioconductor.org/packages/3.10/bioc/html/BSgenome.html
identifiers:
- biotools:bsgenome
- doi:10.1038/nmeth.3252
license: Artistic-2.0
name: bioconductor-bsgenome
summary: Software infrastructure for efficient representation of full genomes and
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1 change: 0 additions & 1 deletion data/bufferedmatrix/bioconda_bufferedmatrix.yaml
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Expand Up @@ -4,7 +4,6 @@ description: A tabular style data object where most data is stored outside main
home: https://bioconductor.org/packages/3.10/bioc/html/BufferedMatrix.html
identifiers:
- biotools:bufferedmatrix
- doi:10.1038/nmeth.3252
license: LGPL (>= 2)
license_file: /lib/R/share/licenses/LGPL-3
name: bioconductor-bufferedmatrix
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Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,6 @@ description: Microarray analysis methods that use BufferedMatrix objects
home: https://bioconductor.org/packages/3.10/bioc/html/BufferedMatrixMethods.html
identifiers:
- biotools:bufferedmatrixmethods
- doi:10.1038/nmeth.3252
license: GPL (>= 2)
license_file: /lib/R/share/licenses/GPL-3
name: bioconductor-bufferedmatrixmethods
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1 change: 0 additions & 1 deletion data/bus/bioconda_bus.yaml
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Expand Up @@ -4,7 +4,6 @@ description: This package can be used to compute associations among genes (gene-
home: https://bioconductor.org/packages/3.10/bioc/html/BUS.html
identifiers:
- biotools:bus
- doi:10.1038/nmeth.3252
license: GPL-3
license_file: /lib/R/share/licenses/GPL-3
name: bioconductor-bus
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1 change: 0 additions & 1 deletion data/cancerinsilico/bioconda_cancerinsilico.yaml
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Expand Up @@ -6,7 +6,6 @@ description: The CancerInSilico package provides an R interface for running math
home: https://bioconductor.org/packages/3.10/bioc/html/CancerInSilico.html
identifiers:
- biotools:cancerinsilico
- doi:10.1038/nmeth.3252
license: GPL-2
license_file: /lib/R/share/licenses/GPL-2
name: bioconductor-cancerinsilico
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1 change: 0 additions & 1 deletion data/cancersubtypes/bioconda_cancersubtypes.yaml
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Expand Up @@ -6,7 +6,6 @@ description: CancerSubtypes integrates the current common computational biology
home: https://bioconductor.org/packages/3.10/bioc/html/CancerSubtypes.html
identifiers:
- biotools:cancersubtypes
- doi:10.1038/nmeth.3252
license: GPL (>= 2)
license_file: /lib/R/share/licenses/GPL-3
name: bioconductor-cancersubtypes
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1 change: 0 additions & 1 deletion data/category/bioconda_category.yaml
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Expand Up @@ -3,7 +3,6 @@ description: A collection of tools for performing category (gene set enrichment)
home: https://bioconductor.org/packages/3.10/bioc/html/Category.html
identifiers:
- biotools:category
- doi:10.1038/nmeth.3252
license: Artistic-2.0
name: bioconductor-category
summary: Category Analysis
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1 change: 0 additions & 1 deletion data/causalr/bioconda_causalr.yaml
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Expand Up @@ -4,7 +4,6 @@ description: Causal network analysis methods for regulator prediction and networ
home: https://bioconductor.org/packages/3.10/bioc/html/CausalR.html
identifiers:
- biotools:causalr
- doi:10.1038/nmeth.3252
license: GPL (>= 2)
license_file: /lib/R/share/licenses/GPL-3
name: bioconductor-causalr
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1 change: 0 additions & 1 deletion data/cellgrowth/bioconda_cellgrowth.yaml
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Expand Up @@ -4,7 +4,6 @@ description: This package provides functionalities for the fitting of cell popul
home: https://bioconductor.org/packages/3.10/bioc/html/cellGrowth.html
identifiers:
- biotools:cellgrowth
- doi:10.1038/nmeth.3252
license: Artistic-2.0
name: bioconductor-cellgrowth
summary: Fitting cell population growth models
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1 change: 0 additions & 1 deletion data/chipseq/bioconda_chipseq.yaml
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Expand Up @@ -3,7 +3,6 @@ description: Tools for helping process short read data for chipseq experiments
home: https://bioconductor.org/packages/3.10/bioc/html/chipseq.html
identifiers:
- biotools:chipseq
- doi:10.1038/nmeth.3252
license: Artistic-2.0
name: bioconductor-chipseq
summary: 'chipseq: A package for analyzing chipseq data'
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1 change: 0 additions & 1 deletion data/chipsim/bioconda_chipsim.yaml
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Expand Up @@ -5,7 +5,6 @@ description: A general framework for the simulation of ChIP-seq data. Although c
home: https://bioconductor.org/packages/3.10/bioc/html/ChIPsim.html
identifiers:
- biotools:chipsim
- doi:10.1038/nmeth.3252
license: GPL (>= 2)
license_file: /lib/R/share/licenses/GPL-3
name: bioconductor-chipsim
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1 change: 0 additions & 1 deletion data/chopsticks/bioconda_chopsticks.yaml
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Expand Up @@ -3,7 +3,6 @@ description: Implements classes and methods for large-scale SNP association stud
home: https://bioconductor.org/packages/3.10/bioc/html/chopsticks.html
identifiers:
- biotools:chopsticks
- doi:10.1038/nmeth.3252
license: GPL-3
license_file: /lib/R/share/licenses/GPL-3
name: bioconductor-chopsticks
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1 change: 0 additions & 1 deletion data/chromheatmap/bioconda_chromheatmap.yaml
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Expand Up @@ -5,7 +5,6 @@ description: The ChromHeatMap package can be used to plot genome-wide data (e.g.
home: https://bioconductor.org/packages/3.10/bioc/html/ChromHeatMap.html
identifiers:
- biotools:chromheatmap
- doi:10.1038/nmeth.3252
license: Artistic-2.0
name: bioconductor-chromheatmap
summary: Heat map plotting by genome coordinate
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1 change: 0 additions & 1 deletion data/cindex/bioconda_cindex.yaml
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Expand Up @@ -10,7 +10,6 @@ description: The CINdex package addresses important area of high-throughput geno
home: https://bioconductor.org/packages/3.10/bioc/html/CINdex.html
identifiers:
- biotools:cindex
- doi:10.1038/nmeth.3252
license: GPL (>= 2)
license_file: /lib/R/share/licenses/GPL-3
name: bioconductor-cindex
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1 change: 0 additions & 1 deletion data/cleaver/bioconda_cleaver.yaml
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Expand Up @@ -4,7 +4,6 @@ description: 'In-silico cleavage of polypeptide sequences. The cleavage rules ar
home: https://bioconductor.org/packages/3.10/bioc/html/cleaver.html
identifiers:
- biotools:cleaver
- doi:10.1038/nmeth.3252
license: GPL (>= 3)
license_file: /lib/R/share/licenses/GPL-3
name: bioconductor-cleaver
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