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robomics/README.md

Hi there 👋

My name is Roberto, and I am passionate about software engineering and biology.

I am a postdoctoral fellow in Jonas Paulsen's group at the University of Oslo where I develop novel bioinformatics workflows and tools with a focus on performance, correctness, and ease of use.

When I am not developing new tools, I spend my time analyzing all kinds of high-throughput sequencing data, including Hi-C, RNA-seq, ChIP-seq, and WGS.

  • 🔭 I’m currently working on a tool to identify statistically significant interactions from Hi-C data
  • 👯 I’m looking to collaborate on projects using SIMD and/or CUDA
  • 🌱 I'm looking forward to learning a new programming language (most likely Rust 🦀)

If you want to contact me, you can do so via

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  1. paulsengroup/hictk paulsengroup/hictk Public

    Blazing fast toolkit to work with .hic and .cool files

    C++ 24 1

  2. paulsengroup/hictkpy paulsengroup/hictkpy Public

    Python bindings for hictk: read and write .cool and .hic files directly from Python

    C++ 13

  3. paulsengroup/hictkR paulsengroup/hictkR Public

    R bindings for hictk: read .cool and .hic files directly from R

    C++ 3

  4. paulsengroup/modle paulsengroup/modle Public

    High-performance stochastic modeling of DNA loop extrusion interactions

    C++ 16 2