doc: Run instructions

rustdelhi · Nov 22, 2023 · edd8c3c · edd8c3c
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diff --git a/README.md b/README.md
@@ -51,7 +51,7 @@ cargo build --release
    (Example files included in assets folder):
 
 ```bash
-./target/release/dna_sequence_analysis --reference covid-beta.fasta --query covid-delta.fasta --print
+cargo run --release -- --reference ./assets/SARS-beta.fasta --query ./assets/SARS-delta.fasta --print
 ```
 
 Example output:
@@ -66,6 +66,8 @@ Score:
 time taken: 11.037773246s
 ```
 
+Run `cargo run --release -- --help` to know more about CLI usage
+
 ### Citations
 
 1. [Sequence Alignmnt](https://en.wikipedia.org/wiki/Sequence_alignment)

diff --git a/examples/covid_varaints.rs b/examples/covid_varaints.rs
@@ -16,8 +16,6 @@ fn main() -> anyhow::Result<()> {
     let delta_record = covid_delta.records().next().unwrap()?;
     let delta_seq = delta_record.seq();
 
-    // TODO: Comapre all sequences with one another
-
     let score = Score::new(1, -1);
     let gap = GapPanelty::new(-5, -1);