segfault repro #44
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| name: segfault repro | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| runs-on: | |
| description: 'Select a runner ("macos-latest" = Intel, "macos-latest-xlarge" = M1)' | |
| default: 'macos-14' | |
| type: choice | |
| options: | |
| - macos-13 | |
| - macos-14 | |
| - ubuntu-20 | |
| - ubuntu-22 | |
| # - windows-latest | |
| ref: | |
| description: 'Branch or tag clone/install/test (leave blank to install latest version from PyPI)' | |
| jobs: | |
| build: | |
| name: repro (${{ inputs.runs-on }}) | |
| runs-on: ${{ inputs.runs-on }} | |
| steps: | |
| - name: 'Debug: `github` context' | |
| run: echo "${{ toJSON(github.event) }}" | |
| - uses: actions/checkout@v4 | |
| - name: Clone TileDB-SOMA@${{ inputs.ref }} | |
| if: inputs.ref != '' | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: single-cell-data/TileDB-SOMA | |
| ref: ${{ inputs.ref }} | |
| path: tiledbsoma | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11.8 | |
| - name: Install TileDB-Py, TileDB-SOMA | |
| run: | | |
| if [ -d tiledbsoma ]; then | |
| echo "Installing TileDB-SOMA from source" | |
| echo "1.15.0rc0" > tiledbsoma/apis/python/RELEASE-VERSION | |
| pip install tiledb -e tiledbsoma/apis/python | |
| else | |
| echo "Installing TileDB-SOMA from PyPI" | |
| pip install tiledb tiledbsoma | |
| fi | |
| - run: pip list | |
| - name: Show TileDB/SOMA/OS versions | |
| run: | | |
| python -c 'import tiledbsoma; tiledbsoma.show_package_versions()' | |
| uname -a | |
| - name: 'Run without importing `tiledb` (always succeeds)' | |
| run: ./segfault-repro.py | |
| - name: 'Run with `import tiledb` before `import tiledbsoma` (sometimes segfaults)' | |
| env: | |
| IMPORT_TILEDB: 1 | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| run: | | |
| ./segfault-repro.py | |
| rv=$? | |
| echo "Exit code: $?" | |
| exit $rv |